Hi, The bug is fixed, for now. This is only for spin selections though so if you see this appear anywhere else, it would be useful to report it so I can fix unicode problems in other parts of the program. Cheers. To get the new code, you need the subversion program:
$ svn co svn://svn.gna.org/svn/relax/1.3 relax-1.3 You may also need to install the repository version of minfx package as well: $ svn co svn://svn.gna.org/svn/minfx/trunk minfx Regards, Edward 2009/12/2 Olivier Serve <[email protected]>: > Hi, > As promised, here is a tar file containing original data, scripts and > results (I also wrote the output of modsel.py in modsel-error.out and remove > some results file from relax-fit, too big). To note, I am using relax 1.3.4 > on a RHEL 5.3 linux. > I did not know that u was prefix for Unicode, in that case, the > problem lies most probably somewhere. I did not have time to test Michael > solution, but it goes in the same direction of an encoding problem. > > Thanks a lot, > > Olivier Serve > > Le 1 déc. 2009 à 23:18, Edward d'Auvergne a écrit : > >> Hi, >> >> Ok, I'll wait. I've noticed that u'u' is actually the 'u' character >> in Unicode. I'll definitely need more info to track this one down. >> The key might be in the results files from the mf_multimodel.py >> script. >> >> Cheers, >> >> Edward >> >> >> 2009/12/1 Olivier Serve <[email protected]>: >>> Dear Edward, >>> Thank you for answering so quickly. I will send you all details >>> tomorrow (It is night time for me now). But what I can say in the mean >>> time, is that : "RelaxError: The selection string u'u' is invalid" is the >>> full error message, quite short indeed, it took me long time to find this. >>> The modsel.py is almost same, I just use model 0 to 5, instead of 0 to 9. >>> But as I wrote in my previous mail, I am not at all sure that my solution >>> is pertinent. >>> I'll to send you a tar file tomorrow with all details. >>> >>> Have a nice day, >>> Bye, >>> Olivier Serve >>> Olivier Serve >>> >>> Le 1 déc. 2009 à 22:40, Edward d'Auvergne a écrit : >>> >>>> Hi, >>>> >>>> I have a feeling that the problem lies elsewhere. This change would >>>> probably be fatal - are the models correctly selected? Could you cut >>>> and paste the full error message? And maybe attach the modsel.py >>>> script? Without this, I'm not sure where the failure point is so I >>>> don't know what the problem could be or what the cause is. >>>> >>>> Cheers, >>>> >>>> Edward >>>> >>>> >>>> >>>> 2009/12/1 Olivier Serve <[email protected]>: >>>>> Hi all, >>>>> I wrote possible bug in my title, because I am not sure yet it is >>>>> not my mistake. Here is my problem : >>>>> I ran smoothly all the following scripts : noe.py, relax-fit.py, >>>>> mf_multimodel.py. But when I ran the modsel.py, I got the following error >>>>> message : RelaxError: The selection string u'u' is invalid. (The name of >>>>> the molecule begins by 'u' (ubiquitin)) >>>>> I tracked down the error (very deep) into relax : modsel.py -> >>>>> prompt/model_selection.Modsel -> >>>>> generic_func/model_selection.select->specific_fns/model_free/main.duplicate_data->generic_fns/sequence.generate->generic_fns/mol_res_spin.return_spin >>>>> at line 1879. >>>>> The code is the following : (selection is a selection string : >>>>> #<mol_name> :<res_id>[, <res_id>[, <res_id>, ...]] @<atom_id>[, >>>>> <atom_id>[, <atom_id>, ...]],) >>>>> if type(selection) == str: >>>>> selection = [selection] >>>>> select_obj = [] >>>>> for i in range(len(selection)): >>>>> select_obj.append(Selection(selection[i])) >>>>> >>>>> I think the problem here is that there is an iteration over a >>>>> selection string (something like #ubi....), so when the Selection >>>>> function sees 'u' alone, it does not mean anything and it raises the >>>>> error. >>>>> I turn the code into : >>>>> select_obj=Selection(selection) >>>>> And change the code accordingly a few lines after. The script >>>>> seemed to have run smoothly afterward. >>>>> >>>>> If this is a bug, I'll be glad to open a bug report. If not, well, >>>>> I'll be glad to know what I am doing wrong. >>>>> >>>>> I wish all of you a nice day, >>>>> Best regards, >>>>> Olivier Serve >>>>> >>>>> >>>>> _______________________________________________ >>>>> relax (http://nmr-relax.com) >>>>> >>>>> This is the relax-users mailing list >>>>> [email protected] >>>>> >>>>> To unsubscribe from this list, get a password >>>>> reminder, or change your subscription options, >>>>> visit the list information page at >>>>> https://mail.gna.org/listinfo/relax-users >>>>> >>> >>> >>> _______________________________________________ >>> relax (http://nmr-relax.com) >>> >>> This is the relax-users mailing list >>> [email protected] > >> >>> >>> To unsubscribe from this list, get a password >>> reminder, or change your subscription options, >>> visit the list information page at >>> https://mail.gna.org/listinfo/relax-users >>> > > > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
