Hi Daniel, This is actually a bug that was fixed a while ago (http://gna.org/bugs/?15050). I have to release relax-1.3.5 soon as there are many bug fixes in the repository sitting there waiting. If you can't wait, you can obtain the new code by following the instructions in one of the following:
https://mail.gna.org/public/relax-users/2008-09/msg00002.html https://mail.gna.org/public/relax-users/2008-10/msg00013.html https://mail.gna.org/public/relax-users/2006-11/msg00006.html All the links are to help with Google indexing, just like this http://www.nmr-relax.com/ ;) The first should be enough, but the others might give more info if you need it. Regards, Edward 2010/3/17 Daniel Pérez <[email protected]>: > Hi Edward, > > I hope you have some time to take a look at this. I have a data set at two > fields. I used relax for fitting the data, but when and run the full_analysis > script, after the software starts the grid search I get the following error > message > > Traceback (most recent call last): > File "/soft/group/relax/relax-1.3.4/relax", line 418, in ? > Relax() > File "/soft/group/relax/relax-1.3.4/relax", line 127, in __init__ > self.interpreter.run(self.script_file) > File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 276, in run > return run_script(intro=self.__intro_string, local=self.local, > script_file=script_file, quit=self.__quit_flag, > show_script=self.__show_script, raise_relax_error=self.__raise_relax_error) > File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 537, in > run_script > return console.interact(intro, local, script_file, quit, > show_script=show_script, raise_relax_error=raise_relax_error) > File "/soft/group/relax/relax-1.3.4/prompt/interpreter.py", line 433, in > interact_script > execfile(script_file, local) > File "full_analysis_markup.py", line 764, in ? > Main(self.relax) > File "full_analysis_markup.py", line 226, in __init__ > self.multi_model(local_tm=True) > File "full_analysis_markup.py", line 755, in multi_model > grid_search(inc=GRID_INC) > File "/soft/group/relax/relax-1.3.4/prompt/minimisation.py", line 156, in > grid_search > minimise.grid_search(lower=lower, upper=upper, inc=inc, > constraints=constraints, verbosity=verbosity) > File "/soft/group/relax/relax-1.3.4/generic_fns/minimise.py", line 191, in > grid_search > grid_search(lower=lower, upper=upper, inc=inc, constraints=constraints, > verbosity=verbosity) > File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/mf_minimise.py", > line 479, in grid_search > self.minimise(min_algor='grid', lower=lower, upper=upper, inc=inc, > constraints=constraints, verbosity=verbosity, sim_index=sim_index) > File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/mf_minimise.py", > line 789, in minimise > model_type = self.determine_model_type() > File "/soft/group/relax/relax-1.3.4/specific_fns/model_free/main.py", line > 1015, in determine_model_type > if cdp.diff_tensor.fixed: > AttributeError: 'PipeContainer' object has no attribute 'diff_tensor' > > > Checking the mailing archive I saw that Tiago Pais got the same error message > last year. > That time you suggested him to use a script containing a markup: > http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup > > ( > The complete answer was: > Re: Error when running full_analysis.py script > Edward d'Auvergne > Tue, 27 Oct 2009 03:02:16 -0700 > > Dear Tiago, > > This is a hard one to catch. I have just added a function to this > script to check the validity of the user variables > (http://svn.gna.org/viewcvs/relax/1.3/sample_scripts/full_analysis.py?rev=9794&view=markup). > This should give better error messages specifically identifying the > problem. For this second issue you are having, it is a little hard to > see what the problem is. Would you be able to supply a little more > information. For example the version of relax you are using, the full > error message, how you have executed the full_analysis.py script and > at what stage you are up to, etc. With more information, I should be > able to track down the issue. > > Cheers, > > Edward > ) > > > > The traceback I showed to you above is coming from running that script, I got > the same error message when I run the canonical full_analysis script. > I'm running relax 1.3.4 in RHEL distribution 5.1.19.6, kernel /vmlinuz > 2.6.18-128.1.10.e15 > > It will be nice if you can help me with this > > Best regards > > Daniel > > > > Dr. Daniel Pérez > Institut für Molekularbiologie und Biophysik > Schafmattstrasse 20 > ETH-Hönggerberg, HPK G 5 > CH-8093 Zürich > Phone: +41 44 633 25 37 > E-mail: [email protected] > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-users mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-users > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
