Hi, Guys
I tried to use this software to calculate the hetNOE based on my with and
without NOE TROSY spectra. I had assigned all the peaks I need in both
reference and with-NOE spectra, exported the two lists as ref.list and
sat.list.
Followed is what I did this morning in the folder where "relax" is in.
1, copy ref.list, at.list and pdb file to the relax folder
2, follow the protocol of calculating NOE in the chapter 4 in the relax.pdf
file
2.1, pipe.create(‘NOE’, ‘noe’)
2.2,structure.read_pdb(file=‘*’)
#if I typed in '*.pdb' instead of '*', then error came
2.3, structure.load_spins(spin_id=...@n’)
# what I am concened is how to avoid 2.2 and 2.3, since it will be no use in
calculating NOE values
2.4, noe.read(file=‘ref.list’, spectrum_type=‘ref’)
noe.read(file=‘sat.list’, spectrum_type=‘sat’)
#both of them did not work.
#error information:
Traceback(most recent call last):
File "<console>", line 1, in <module>
AttributeError:Noe instance has no attribute 'read'
# I checked the "alphabetical listing of user functions", there is no
detail of this function.
Sorry to raise so many problems. If you guys know how to solve them, please
write back to me.
Thanks
Dungeng Peng
Department of Biochemistry
Vanderbilt University
5110D MRBIII 465 21st Ave. S.
Nashville, Tennessee 37232-8725
phone: 615-936-3757 fax: 615-936-2211
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