Hi Maddy, This looks like a clear bug! Would you like to submit a bug report about this? That would help in tracking it down. The submission can be done at https://gna.org/bugs/?func=additem&group=relax.
Cheers, Edward On 23 August 2011 18:23, Maddy Strickland <[email protected]> wrote: > Hello, > > I've been trying to use the new 1.3.11, skipping straight from 1.3.9. > I've been having trouble with the dauvergne_protocol.py script. The > program doesn't seem to recognise this script like 1.3.9 does. The error > comes after reading the sequence, so I assume it must be when reading the > data files (NOE/R1/R2 etc.). I think it's something to do with the fact > that 'RELAX_DATA' hasn't been updated in the same way as > 'relax_data.read'. It's getting 'ri_label' rather than the 'ri_id' it's > expecting? Is there a way of formatting this script that solves this > problem? I've tried loads of different ways. > > Maddy > > ------------------------------ > None 2033 HIS None N > None 2034 HIS None N > None 2035 HIS None N > None 2036 HIS None N > None 2037 HIS None N > None 2038 HIS None N > Traceback (most recent call last): > File "/usr/local/bin/relax", line 7, in <module> > relax.start() > File "/usr/local/relax/relax.py", line 80, in start > Relax(mode) > File "/usr/local/relax/relax.py", line 149, in __init__ > self.interpreter.run(self.script_file) > File "/usr/local/relax/prompt/interpreter.py", line 297, in run > return run_script(intro=self.__intro_string, local=locals(), > script_file=script_file, quit=self.__quit_flag, > show_script=self.__show_script, > raise_relax_error=self.__raise_relax_error) > File "/usr/local/relax/prompt/interpreter.py", line 606, in run_script > return console.interact(intro, local, script_file, quit, > show_script=show_script, raise_relax_error=raise_relax_error) > File "/usr/local/relax/prompt/interpreter.py", line 492, in interact_script > exec_script(script_file, local) > File "/usr/local/relax/prompt/interpreter.py", line 380, in exec_script > runpy.run_module(module, globals) > File "/usr/local/lib/python2.6/runpy.py", line 140, in run_module > fname, loader, pkg_name) > File "/usr/local/lib/python2.6/runpy.py", line 34, in _run_code > exec code in run_globals > File > "/home/ms4225/nmr_data/IGF2R/dynamics/relax/chicken/FINALC_110823_relax11/full_analysis_localtm.py", > line 199, in <module> > dAuvergne_protocol(diff_model=DIFF_MODEL, mf_models=MF_MODELS, > local_tm_models=LOCAL_TM_MODELS, pdb_file=PDB_FILE, seq_args=SEQ_ARGS, > het_name=HET_NAME, attached_name=ATTACHED_NAME, relax_data=RELAX_DATA, > unres=UNRES, exclude=EXCLUDE, bond_length=BOND_LENGTH, csa=CSA, > hetnuc=HETNUC, proton=PROTON, grid_inc=GRID_INC, min_algor=MIN_ALGOR, > mc_num=MC_NUM, conv_loop=CONV_LOOP) > File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 228, > in __init__ > self.execute() > File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 556, > in execute > self.multi_model(local_tm=True) > File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 821, > in multi_model > self.interpreter.relax_data.read(ri_label=data[0], frq_label=data[1], > frq=data[2], file=data[3], dir=data[4], mol_name_col=data[5], > res_num_col=data[6], res_name_col=data[7], spin_num_col=data[8], > spin_name_col=data[9], data_col=data[10], error_col=data[11], > sep=data[12]) > TypeError: read() got an unexpected keyword argument 'ri_label' > [ms4225@amber FINALC_110823_relax11]$ > > > Madeleine Strickland > > MCJC Group > N317, School of Chemistry, Bristol University > > > _______________________________________________ > relax (http://nmr-relax.com) > > This is the relax-users mailing list > [email protected] > > To unsubscribe from this list, get a password > reminder, or change your subscription options, > visit the list information page at > https://mail.gna.org/listinfo/relax-users > _______________________________________________ relax (http://nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
