Hi, I use CoRD client on a MAC 10.5 and use tunnelblick VPN to log on to the linux machines. The 1.3.16 is on linux x86_64 CentOS5. Will try the newer wx_python and see.
Venkat On Fri, Aug 10, 2012 at 1:12 AM, Edward d'Auvergne <[email protected]>wrote: > Hi, > > I'm a bit confused, the RDP server is a MS Windows only product > (http://en.wikipedia.org/wiki/Remote_Desktop_Protocol). Did you > install 1.3.16 on Windows or Linux? I'm almost 100% sure that the > problem is, however, the wxPython installation. Please try to compile > the 2.9 version and test that instead. As the internal tests of the > wxPython demos fail, then there will be no way to ever make the > wxPython execute the relax GUI. These tests must, without question, > pass otherwise there is no point even trying the relax GUI as the GUI > will never work. If you can compile the latest 2.9 version and run > the same tests using the demos for that exact 2.9 version, then the > relax GUI should instantly be visible via SSH, VNC, RDP, telnet, etc. > I would recommend VNC or RDP though as this is much faster for modern > apps. > > Regards, > > Edward > > > On 9 August 2012 19:38, Venkat V <[email protected]> wrote: > > Hi Edward, > > > > > > To make sure wx_python has issues I tried the following: > > > > I tried the earlier version of relax 1.3.16 via ssh and that seg faults. > > But relax version 1.3.16 works when use RDP and try it with the same > > wx_python. > > > > > > venkat > > > > > > On Thu, Aug 9, 2012 at 9:03 PM, Edward d'Auvergne <[email protected]> > > wrote: > >> > >> Hi, > >> > >> Those are very strange errors! It might be an indication that the > >> wxPython compilation failed. Does the version.py file that came with > >> the wxPython demos match the wxPython version you have installed? I > >> would suggest trying the 2.9 wxPython versions, or having a close look > >> at the compilation messages. In any case, your wxPython installation > >> does not appear to be in a healthy state. > >> > >> Regards, > >> > >> Edward > >> > >> > >> > >> On 9 August 2012 17:15, Venkat V <[email protected]> wrote: > >> > Hi Edward, > >> > > >> > Here is the o/p of the wx tests. > >> > > >> > $ which python > >> > /programs/x86_64-linux/python/2.7.2/bin/python > >> > sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo > >> > $ python run.py Ge > >> > GenericButtons.py GenericDirCtrl.py GetMouseState.py > >> > sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo > >> > $ python run.py Gene > >> > GenericButtons.py GenericDirCtrl.py > >> > sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo > >> > $ python run.py GenericButtons.py > >> > Python 2.7.2 (default, Oct 27 2011, 16:10:58) > >> > [GCC 4.1.2 20080704 (Red Hat 4.1.2-51)] > >> > wx.version: 2.8.12.1 (gtk2-unicode) > >> > pid: 32382 > >> > Traceback (most recent call last): > >> > File "run.py", line 162, in <module> > >> > main(sys.argv) > >> > File "run.py", line 156, in main > >> > app = RunDemoApp(name, module, useShell) > >> > File "run.py", line 50, in __init__ > >> > wx.App.__init__(self, redirect=False) > >> > File > >> > > >> > > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", > >> > line 7981, in __init__ > >> > self._BootstrapApp() > >> > File > >> > > >> > > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", > >> > line 7555, in _BootstrapApp > >> > return _core_.PyApp__BootstrapApp(*args, **kwargs) > >> > File "run.py", line 57, in OnInit > >> > self.InitInspection() # for the InspectionMixin base class > >> > AttributeError: 'RunDemoApp' object has no attribute 'InitInspection' > >> > sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo > >> > $ python run.py StaticBitmap.py > >> > Python 2.7.2 (default, Oct 27 2011, 16:10:58) > >> > [GCC 4.1.2 20080704 (Red Hat 4.1.2-51)] > >> > wx.version: 2.8.12.1 (gtk2-unicode) > >> > pid: 32429 > >> > Traceback (most recent call last): > >> > File "run.py", line 162, in <module> > >> > main(sys.argv) > >> > File "run.py", line 156, in main > >> > app = RunDemoApp(name, module, useShell) > >> > File "run.py", line 50, in __init__ > >> > wx.App.__init__(self, redirect=False) > >> > File > >> > > >> > > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", > >> > line 7981, in __init__ > >> > self._BootstrapApp() > >> > File > >> > > >> > > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", > >> > line 7555, in _BootstrapApp > >> > return _core_.PyApp__BootstrapApp(*args, **kwargs) > >> > File "run.py", line 57, in OnInit > >> > self.InitInspection() # for the InspectionMixin base class > >> > AttributeError: 'RunDemoApp' object has no attribute 'InitInspection' > >> > sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo > >> > $ python run.py ComboCtrl.py > >> > Python 2.7.2 (default, Oct 27 2011, 16:10:58) > >> > [GCC 4.1.2 20080704 (Red Hat 4.1.2-51)] > >> > wx.version: 2.8.12.1 (gtk2-unicode) > >> > pid: 32476 > >> > Traceback (most recent call last): > >> > File "run.py", line 162, in <module> > >> > main(sys.argv) > >> > File "run.py", line 156, in main > >> > app = RunDemoApp(name, module, useShell) > >> > File "run.py", line 50, in __init__ > >> > wx.App.__init__(self, redirect=False) > >> > File > >> > > >> > > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", > >> > line 7981, in __init__ > >> > self._BootstrapApp() > >> > File > >> > > >> > > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_core.py", > >> > line 7555, in _BootstrapApp > >> > return _core_.PyApp__BootstrapApp(*args, **kwargs) > >> > File "run.py", line 57, in OnInit > >> > self.InitInspection() # for the InspectionMixin base class > >> > AttributeError: 'RunDemoApp' object has no attribute 'InitInspection' > >> > sbtest@vm-11 [centos-5-x86_64] ~/test/relax/wxtest/demo > >> > > >> > > >> > sincerely, > >> > > >> > Venkat > >> > > >> > On Thu, Aug 9, 2012 at 1:40 AM, Edward d'Auvergne < > [email protected]> > >> > wrote: > >> >> > >> >> Hi, > >> >> > >> >> Do you have the wx demos? You can download them from > >> >> > >> >> > http://downloads.sourceforge.net/wxpython/wxPython-demo-2.8.12.1.tar.bz2 > >> >> and run these directly. The results of the following tests are > >> >> important: > >> >> > >> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py > >> >> GenericButtons.py > >> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py > StaticBitmap.py > >> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py ComboCtrl.py > >> >> > >> >> As you have compiled this version of wxPython and it seems to be > >> >> broken, I would recommend downloading the latest 2.9.4.0 version and > >> >> trying that. I have extensively tested with 2.9.3.1 and everything > >> >> works very nicely, and the Mac OS X distribution dmg file has this > >> >> version built in. Note that the 2.9 versions are much simpler to > >> >> compile and install. The 2.8 version I have tested is 2.8.11.0, > >> >> therefore I would suggest that wxPython has introduced a bug between > >> >> 2.8.11.0 and 2.8.12.1. > >> >> > >> >> Regards, > >> >> > >> >> Edward > >> >> > >> >> > >> >> P. S. If the 2.9 versions work, the report from the wxPython 2.8 > >> >> demos would still be very useful for any other relax users who > >> >> encounter the same problem. > >> >> > >> >> > >> >> > >> >> On 8 August 2012 21:11, Venkat V <[email protected]> wrote: > >> >> > Hi , > >> >> > > >> >> > Here is how wx-python was installed. > >> >> > > >> >> > ./configure --prefix=/programs/x86_64-linux/wxpython/2.8.12.1 > >> >> > --enable-unicode --with-gtk --with-gnomeprint --with-opengl > >> >> > --with-libjpeg=builtin --with-libpng=builtin --with-libtiff=builtin > >> >> > --with-zlib=builtin --enable-optimize --enable-debug_flag > >> >> > --enable-rpath=/programs/x86_64-linux/wxpython/2.8.12.1/lib > >> >> > make && make install > >> >> > cd contrib > >> >> > make && make install > >> >> > cd ../wxPython > >> >> > export PATH=programs/system/x86_64-linux/wxpython/ > 2.8.12.1/bin:$PATH > >> >> > python setup.py install > >> >> > > >> >> > > >> >> > Output of relax --info > >> >> > > >> >> > relax --info > >> >> > > >> >> > > >> >> > > >> >> > relax 2.1.0 > >> >> > > >> >> > Molecular dynamics by NMR data > analysis > >> >> > > >> >> > Copyright (C) 2001-2006 Edward > >> >> > d'Auvergne > >> >> > Copyright (C) 2006-2012 the relax > >> >> > development > >> >> > team > >> >> > > >> >> > This is free software which you are welcome to modify and > >> >> > redistribute > >> >> > under > >> >> > the conditions of the > >> >> > GNU General Public License (GPL). This program, including all > >> >> > modules, > >> >> > is > >> >> > licensed under the GPL > >> >> > and comes with absolutely no warranty. For details type 'GPL' > within > >> >> > the > >> >> > relax prompt. > >> >> > > >> >> > Assistance in using the relax prompt and scripting interface can be > >> >> > accessed > >> >> > by typing 'help' within > >> >> > the prompt. > >> >> > > >> >> > Processor fabric: Uni-processor. > >> >> > > >> >> > > >> >> > Hardware information: > >> >> > Machine: x86_64 > >> >> > Processor: x86_64 > >> >> > Endianness: little > >> >> > Total RAM size: 2011 Mb > >> >> > Total swap size: 509 Mb > >> >> > > >> >> > Operating system information: > >> >> > System: Linux > >> >> > Release: 2.6.18-194.17.1.el5 > >> >> > Version: #1 SMP Wed Sep 29 12:50:31 EDT 2010 > >> >> > GNU/Linux version: CentOS 5.8 Final > >> >> > Distribution: redhat 5.8 Final > >> >> > Full platform string: > >> >> > Linux-2.6.18-194.17.1.el5-x86_64-with-redhat-5.8-Final > >> >> > > >> >> > Python information: > >> >> > Architecture: 64bit ELF > >> >> > Python version: 2.7.2 > >> >> > Python branch: > >> >> > Python build: default, Oct 27 2011 16:10:58 > >> >> > Python compiler: GCC 4.1.2 20080704 (Red Hat 4.1.2-51) > >> >> > Libc version: glibc 2.2.5 > >> >> > Python implementation: CPython > >> >> > Python revision: > >> >> > Python executable: > >> >> > /programs/x86_64-linux/python/2.7.2/bin/python > >> >> > Python flags: sys.flags(debug=0, py3k_warning=0, > >> >> > division_warning=0, division_new=0, inspect=0, interactive=0, > >> >> > optimize=0, > >> >> > dont_write_bytecode=0, no_user_site=0, no_site=0, > >> >> > ignore_environment=0, > >> >> > tabcheck=0, verbose=0, unicode=0, bytes_warning=0) > >> >> > Python float info: > >> >> > sys.float_info(max=1.7976931348623157e+308, > >> >> > max_exp=1024, max_10_exp=308, min=2.2250738585072014e-308, > >> >> > min_exp=-1021, > >> >> > min_10_exp=-307, dig=15, mant_dig=53, > epsilon=2.220446049250313e-16, > >> >> > radix=2, rounds=1) > >> >> > Python module path: ['/programs/x86_64-linux/relax/2.1.0', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/pip-1.0.2-py2.7.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/matplotlib-1.1.0-py2.7-linux-x86_64.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/yolk-0.4.1-py2.7.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MySQL_python-1.2.3-py2.7-linux-x86_64.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/VTK-5.6.1-py2.7.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MDAnalysis-0.7.5.1-py2.7-linux-x86_64.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/GridDataFormats-0.2.2-py2.7.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/networkx-1.6-py2.7.egg', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/MDAnalysisTests-0.7.5.1-py2.7.egg', > >> >> > '/programs/x86_64-linux/ccp4/6.2.0/ccp4-6.2.0/share/python', > >> >> > '/programs/x86_64-linux/ccpnmr/2.2.1/ccpnmr2.2/python', > >> >> > '/programs/x86_64-linux/csrosetta/20120626/python', > >> >> > '/programs/x86_64-linux/eman/1.9/lib', > >> >> > '/programs/x86_64-linux/eman2/20120806/lib', > >> >> > '/programs/x86_64-linux/eman2/20120806/bin', > >> >> > '/programs/x86_64-linux/haddock/2.1', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python27.zip', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/plat-linux2', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-tk', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-old', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages', > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/PIL', > >> >> > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages', > >> >> > > >> >> > > >> >> > > '/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode', > >> >> > > '/programs/x86_64-linux/relax/2.1.0/extern/scientific_python/linux2'] > >> >> > > >> >> > Python packages and modules (most are optional): > >> >> > > >> >> > Name Installed Version Path > >> >> > minfx True Unknown > >> >> > /programs/x86_64-linux/relax/2.1.0/minfx > >> >> > bmrblib True Unknown > >> >> > /programs/x86_64-linux/relax/2.1.0/bmrblib > >> >> > numpy True 1.6.1 > >> >> > > /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/numpy > >> >> > scipy True 0.10.0 > >> >> > > /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/scipy > >> >> > wxPython True 2.8.12.1 (gtk2-unicode) > >> >> > > >> >> > > >> >> > > /programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx > >> >> > mpi4py False > >> >> > epydoc False > >> >> > optparse True 1.5.3 > >> >> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/optparse.pyc > >> >> > readline True > >> >> > > >> >> > > >> >> > > /programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload/readline.so > >> >> > profile True > >> >> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/profile.pyc > >> >> > bz2 True > >> >> > > /programs/x86_64-linux/python/2.7.2/lib/python2.7/lib-dynload/bz2.so > >> >> > gzip True > >> >> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/gzip.pyc > >> >> > os.devnull True > >> >> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/os.pyc > >> >> > xml True 0.8.4 (internal) > >> >> > /programs/x86_64-linux/python/2.7.2/lib/python2.7/xml/__init__.pyc > >> >> > xml.dom.minidom True > >> >> > > /programs/x86_64-linux/python/2.7.2/lib/python2.7/xml/dom/minidom.pyc > >> >> > > >> >> > relax information: > >> >> > Version: 2.1.0 > >> >> > Processor fabric: Uni-processor. > >> >> > > >> >> > relax C modules: > >> >> > > >> >> > Module Compiled File type > >> >> > Path > >> >> > maths_fns.relax_fit True ELF 64-bit LSB shared object, > AMD > >> >> > x86-64, > >> >> > version 1 (SYSV), not stripped > >> >> > /programs/x86_64-linux/relax/2.1.0/maths_fns/relax_fit.so > >> >> > > >> >> > > >> >> > Will get the wx_python o/p by tomorrow > >> >> > > >> >> > venkat > >> >> > > >> >> > On Wed, Aug 8, 2012 at 5:09 PM, Edward d'Auvergne > >> >> > <[email protected]> > >> >> > wrote: > >> >> >> > >> >> >> Hi Venkat, > >> >> >> > >> >> >> I have seen the log file attached to your bug report > >> >> >> (https://gna.org/bugs/?19987). There seems to be two separate > >> >> >> issues > >> >> >> here. The first is the two failures in the system tests. As you > >> >> >> can > >> >> >> probably see, this is for Art Palmer's Modelfree4 program. From > the > >> >> >> lower precision of the chi-squared values from your installed > >> >> >> version, > >> >> >> I would assume that you have a version much older than the current > >> >> >> (though still very old) 4.20 version which includes a number of > >> >> >> patches I sent to Art to fix bugs and to compile with GCC > >> >> >> > >> >> >> > >> >> >> ( > http://biochemistry.hs.columbia.edu/labs/palmer/software/modelfree.html). > >> >> >> You can ignore these two failures. > >> >> >> > >> >> >> The second problem is in the GUI tests. I think these messages > >> >> >> clearly identify the problem. The important error message is the > >> >> >> very > >> >> >> first: > >> >> >> > >> >> >> Traceback (most recent call last): > >> >> >> File > >> >> >> > >> >> >> > >> >> >> > "/programs/x86_64-linux/relax/2.1.0/test_suite/gui_tests/base_classes.py", > >> >> >> line 198, in setUp > >> >> >> self.app.gui = Main(parent=None, id=-1, title="") > >> >> >> File "/programs/x86_64-linux/relax/2.1.0/gui/relax_gui.py", line > >> >> >> 162, in __init__ > >> >> >> self.add_start_screen() > >> >> >> File "/programs/x86_64-linux/relax/2.1.0/gui/relax_gui.py", line > >> >> >> 259, in add_start_screen > >> >> >> image = wx.StaticBitmap(self, -1, > >> >> >> bitmap_setup(paths.IMAGE_PATH+'ulysses_shadowless_400x168.png')) > >> >> >> File "/programs/x86_64-linux/relax/2.1.0/gui/misc.py", line 133, > >> >> >> in > >> >> >> bitmap_setup > >> >> >> bitmap.SetMaskColour(None) > >> >> >> File > >> >> >> > >> >> >> > >> >> >> > "/programs/x86_64-linux/python/2.7.2/lib/python2.7/site-packages/wx-2.8-gtk2-unicode/wx/_gdi.py", > >> >> >> line 632, in SetMaskColour > >> >> >> return _gdi_.Bitmap_SetMaskColour(*args, **kwargs) > >> >> >> PyAssertionError: C++ assertion "Ok()" failed at > >> >> >> ./src/gtk/colour.cpp(146) in Blue(): invalid colour > >> >> >> > >> >> >> The second is just an error caused by the failure of the first > test > >> >> >> - > >> >> >> nothing to worry about. You can then see that these two error > >> >> >> messages are alternatively repeated for all the GUI tests. The > key > >> >> >> is > >> >> >> the failure of the setting of the mask > >> >> >> (http://en.wikipedia.org/wiki/Mask_%28computing%29#Image_masks) > for > >> >> >> the bitmap image. This clearly indicates that your wxPython > install > >> >> >> is broken (for your sys admin - I'm guessing because of the > linking > >> >> >> to > >> >> >> the GTK+ libraries). You might be able to test this with the > >> >> >> wxPython > >> >> >> demos for this wxPython version. Try the following and see if you > >> >> >> observe error messages: > >> >> >> > >> >> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py > >> >> >> GenericButtons.py > >> >> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py > >> >> >> StaticBitmap.py > >> >> >> $ /programs/x86_64-linux/python/2.7.2/bin/python run.py > ComboCtrl.py > >> >> >> > >> >> >> These should all run fine. Note you need to be in the wx_demo > >> >> >> directory containing the run.py and other files. Could you copy > and > >> >> >> paste the output of these tests. Also, I just noticed that your > >> >> >> information from: > >> >> >> > >> >> >> $ relax --info > >> >> >> > >> >> >> was accidentally not sent to the mailing lists. Could you copy > and > >> >> >> paste that output as well for reference. Remember to click on > >> >> >> 'reply-to-all' rather than just 'reply' when responding. Other > >> >> >> information that would be useful is how is this wxPython > installed? > >> >> >> Is it installed from the package management system, is it > downloaded > >> >> >> binaries, or is it self compiled? Is it also installed locally or > >> >> >> on > >> >> >> an NFS share, for example? > >> >> >> > >> >> >> Cheers, > >> >> >> > >> >> >> Edward > >> >> >> > >> >> >> > >> >> >> P.S. To summarize, here is a check list of needed information: > >> >> >> > >> >> >> 1. wx_demo tests output. > >> >> >> 2. relax --info output. > >> >> >> 3. wxPython install info. > >> >> >> > >> >> >> > >> >> >> > >> >> >> On 8 August 2012 13:07, venkataraman <[email protected]> > >> >> >> wrote: > >> >> >> > I had sent the error report as a text file for the o/p of > >> >> >> > relax --test-suite on x86_64-linux on centOS5. > >> >> >> > > >> >> >> > > >> >> >> > > >> >> >> > _______________________________________________ > >> >> >> > relax (http://www.nmr-relax.com) > >> >> >> > > >> >> >> > This is the relax-users mailing list > >> >> >> > [email protected] > >> >> >> > > >> >> >> > To unsubscribe from this list, get a password > >> >> >> > reminder, or change your subscription options, > >> >> >> > visit the list information page at > >> >> >> > https://mail.gna.org/listinfo/relax-users > >> >> > > >> >> > > >> > > >> > > > > > >
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