Dear Mengjun, I have tested the loading of the Bruker Dynamics Centre NOE test file as you suggest in your bug report (http://gna.org/bugs/?20132). The error you see there is MS Windows specific - I cannot reproduce the error on a GNU/Linux system. However, on close investigation, I can see that this error would now disappear thanks to my fix to your other bug report (http://gna.org/bugs/?20133). That bug actually triggers this bug! So without bug #20133, bug #20132 should never occur. Therefore I might close the bug report as being fixed (unless you wish to use subversion to obtain the most up to date code and test if the bug really has permanently disappeared).
The solution is to set up your spin systems first. The new code will simply tell you that this needs to be done via a RelaxError message. As in my last email, see the relax data model chapter of the newest copy of the user manual (http://download.gna.org/relax/manual/) for a detailed description of how to do this. Regards, Edward On 4 September 2012 17:29, Edward d'Auvergne <[email protected]> wrote: > Dear Mengjun, > > Thank you for the bug report (http://gna.org/bugs/?20133). I have > changed your title to be more descriptive to the bug. This message is > also public and is being sent to the relax-users mailing list. If you > haven't joined this list (https://gna.org/mail/?group=relax), I would > highly recommend it as other relax users might be able to help you as > well, and without being subscribed to the list you might then miss > their replies to your messages. > > This was quite an easy bug to fix, it was just a one line change > (http://article.gmane.org/gmane.science.nmr.relax.scm/15204). There > are two ways to obtain this fix: > > - Wait until relax version 2.1.1 is released (this is uncertain). > - Use the subversion program (http://subversion.apache.org/) to obtain > the most up to date copy of the relax source code from the repository > (https://gna.org/svn/?group=relax). > > In this case however, I can say that with the newest version you will > simply then have a little RelaxError window appearing saying that your > sequence or spin system data is missing. From the screenshots > attached to your other bug report > (https://gna.org/bugs/index.php?20132), I can see that the "Spin > systems" GUI element in the main model-free analysis tab says "0 spins > loaded and selected". This is where the problem is. You will need to > click on the "Spin editor" button to set up your spin systems. I have > recently made some large changes to the relax user manual, especially > in regards to the use of the GUI. I would recommend you look at the > newest copy of the manual that I have uploaded to > http://download.gna.org/relax/manual/ (currently r17448). The relax > data model chapter is where you should start for setting up your spin > systems. I hope this information helps. > > Regards, > > Edward > > > > On 4 September 2012 16:22, anonymous <[email protected]> wrote: >> URL: >> <http://gna.org/bugs/?20133> >> >> Summary: Bug 2 >> Project: relax >> Submitted by: None >> Submitted on: Tue 04 Sep 2012 02:22:33 PM UTC >> Category: GUI >> Severity: 3 - Normal >> Priority: 5 - Normal >> Status: None >> Privacy: Public >> Assigned to: None >> Originator Name: >> Originator Email: [email protected] >> Open/Closed: Open >> Discussion Lock: Any >> Release: 2.1.0 >> Operating System: None >> >> _______________________________________________________ >> >> Details: >> >> operating system: windows7 >> >> >> version of Relax: 2.1.0 >> >> >> operation steps: >> >> >> 1. start Relax_gui_mode.py >> >> >> 2. click new analysis >> >> >> 3. click model-free analysis >> >> >> 4. click next >> >> >> 5. click start >> >> >> 6. click Add (bruker) >> >> >> 7.type 'noe_700' in the term of The relaxation data ID string >> >> >> 8. load the file 'NOE demo.txt' >> >> >> 9. click Next >> >> >> to make it clear I also make some screenshots, >> >> >> then the following errors come up: >> >> Copyright (C) 2006-2012 the relax development team >> >> This is free software which you are welcome to modify and redistribute under >> the conditions of the GNU General Public License (GPL). This program, >> including all modules, is licensed under the GPL and comes with absolutely no >> warranty. For details type 'GPL' within the relax prompt. >> >> Assistance in using the relax prompt and scripting interface can be accessed >> by >> typing 'help' within the prompt. >> >> Processor fabric: Uni-processor. >> >> >> relax> bruker.read(ri_id=None, file='C:\\Users\\Mengjun >> Xue\\Desktop\\Discussion with Franzen\\tutorial_pdc\\NOE demo.txt', dir=None) >> Traceback (most recent call last): >> File "C:\Users\Mengjun Xue\Desktop\desk120816\relax nmr >> abc\relax-2.1.0.Win32\relax-2.1.0\gui\interpreter.py", line 299, in run >> apply(fn, args, kwds) >> File "C:\Users\Mengjun Xue\Desktop\desk120816\relax nmr >> abc\relax-2.1.0.Win32\relax-2.1.0\generic_fns\bruker.py", line 99, in read >> raise RelaxNoSequenceError >> NameError: global name 'RelaxNoSequenceError' is not defined >> >> >> >> >> >> >> _______________________________________________________ >> >> File Attachments: >> >> >> ------------------------------------------------------- >> Date: Tue 04 Sep 2012 02:22:33 PM UTC Name: NOE (demo ubiquitine).txt Size: >> 17kB By: None >> >> <http://gna.org/bugs/download.php?file_id=16474> >> >> _______________________________________________________ >> >> Reply to this item at: >> >> <http://gna.org/bugs/?20133> >> >> _______________________________________________ >> Message sent via/by Gna! >> http://gna.org/ >> >> >> _______________________________________________ >> relax (http://www.nmr-relax.com) >> >> This is the relax-devel mailing list >> [email protected] >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-devel _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
