Hello Kozo, Would you be able to submit a bug report for this? The link is http://www.nmr-relax.com/manual/Reporting_bugs.html. Cheers. It would be useful if you could describe what you have done. The more information the better. If you have used a script, you can attach the script to the bug report. Otherwise describe all the steps you performed in the GUI or prompt modes. The RelaxFault you have encountered really should never be reached. The only way this can happen is if the S2f order parameter is optimised to the value of None, or the optimisation is skipped entirely. But relax should have stopped you long before reaching this point, clearly explaining what went wrong.
Also the output you show is totally unidentifiable. I could guess that these are some sort of order parameters, but it could be chemical exchange or possibly even internal correlation times. Therefore I cannot tell you why you have no values for residues 6-9. Also because there is zero information about how you reached the RelaxFault, that also makes it beyond impossible to determine the problem. If you can provide more information, this would considerably help me in identifying what went wrong. Cheers, Edward P. S. I was wondering if you have followed my graphical tutorials in how to use the relax GUI for a model-free analysis (http://www.nmr-relax.com/manual/new_protocol_in_GUI.html, in the model-free chapter of the user manual http://www.nmr-relax.com/manual/Model_free_analysis.html)? And did you use relax to determine the R1, R2, and NOE values? On 20 November 2012 15:16, Kozo Keisho <[email protected]> wrote: > Traceback (most recent call last): > File "gui/analyses/execute.pyc", line 87, in run > File "gui/analyses/auto_model_free.pyc", line 808, in run_analysis > File "auto_analyses/dauvergne_protocol.pyc", line 234, in __init__ > File "auto_analyses/dauvergne_protocol.pyc", line 735, in execute > File "auto_analyses/dauvergne_protocol.pyc", line 901, in write_results > File "prompt/uf_objects.pyc", line 219, in __call__ > File "generic_fns/pymol_control.pyc", line 504, in macro_write > File "generic_fns/pymol_control.pyc", line 358, in create_macro > File "specific_fns/model_free/macro_base.pyc", line 499, in create_macro > File "specific_fns/model_free/macro_base.pyc", line 179, in classic_style > > > Storing the relax state in the file 'relax_state_20121120_113729.bz2'. > > > RelaxFault: RelaxError: Impossible to be here, please re-run relax with the > '--debug' flag and summit a bug report at https://gna.org/projects/relax/. > > > in viewer i get something like this > > # mol_name res_num res_name spin_num spin_name value > error > Juk_relx_mol1 1 ALA 20 N > 0.7657749408593296 0.04038631865475668 > Juk_relx_mol1 1 ALA 25 H None > None > Juk_relx_mol1 2 MSE 30 N > 0.8019303974275404 0.048612135756403115 > Juk_relx_mol1 2 MSE 38 H None > None > Juk_relx_mol1 2 MSE 44 HE1 None > None > Juk_relx_mol1 6 TRP 90 N None > None > Juk_relx_mol1 6 TRP 104 H None > None > Juk_relx_mol1 6 TRP 100 NE1 None > None > Juk_relx_mol1 6 TRP 109 HE1 None > None > Juk_relx_mol1 7 ALA 114 N None > None > Juk_relx_mol1 7 ALA 119 H None > None > Juk_relx_mol1 8 GLU 124 N None > None > Juk_relx_mol1 8 GLU 133 H None > None > Juk_relx_mol1 9 ALA 139 N None > None > Juk_relx_mol1 9 ALA 144 H None > None > > why i get no value for residues like 6, 7, 8 and 9? _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list [email protected] To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
