Hi Lora,

Please see below:

> I have two questions about doing this.
> 1. Can I use the GUI to set everything up and then instead of starting it, 
> save the scripts so that I can direct them to be started in the queue, or do 
> I have to modify each script with a text editor?

Yes, just save the state and then create a basic script that loads
that state and then execute the auto-analysis.  You just need a
pipe.create user function call and the last line of the
dauvergne_protocol.py sample script (and an import from the top).  It
can all be done in a 3 line script, if you wish.


> 2. When starting the full analysis with a script UI mode (which I need to do 
> to submit the job), the manual says you need 6 scripts, one for each 
> diffusion model. Does this mean that I will need to submit multiple jobs to a 
> queue, one for each model? If yes, would the first 5 need to be done before 
> the "final" is used? Or would it be possible to direct all of them to occur 
> in one large script?

This is optional for the auto-analysis, see the diff_model argument:

http://www.nmr-relax.com/api/3.3/auto_analyses.dauvergne_protocol.dAuvergne_protocol-class.html#__init__

You should use this documentation to help set up the auto-analysis in
script mode.

Regards,

Edward

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