Source: python-biom-format
Version: 2.1.4+dfsg-1
Severity: serious
Justification: fails to build from source
Usertags: ftbfs

Dear Maintainer,

python-biom-format fails to build from source in unstable/amd64:

  ERROR: test_valid_hdf5_metadata_v210
  Traceback (most recent call last):
    File "/usr/lib/python2.7/dist-packages/numpy/testing/",
    line 146, in skipper_func
      return f(*args, **kwargs)
    line 62, in test_valid_hdf5_metadata_v210
    File "/usr/lib/python2.7/dist-packages/pyqi/core/", line
    137, in __call__
      result =**kwargs)
    File "biom/commands/", line 73, in run
      is_json = not is_hdf5_file(kwargs['table'])
    File "biom/", line 507, in is_hdf5_file
      with open(fp) as f:
  IOError: [Errno 2] No such file or directory:
  Ran 252 tests in 2.720s
  FAILED (SKIP=1, errors=3)
  E: pybuild pybuild:274: test: plugin distutils failed with: exit
  code=1: cd
  python2.7 -m nose tests
  dh_auto_test: pybuild --test -i python{version} -p 2.7 --dir .
  returned exit code 13
  debian/rules:20: recipe for target 'build' failed
  make: *** [build] Error 25
  dpkg-buildpackage: error: debian/rules build gave error exit status 2


The full build log is attached or can be viewed here:


     : :'  :     Chris Lamb
     `. `'` /

Attachment: python-biom-format.2.1.4+dfsg-1.unstable.amd64.log.txt.gz
Description: application/gzip

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