Source: bowtie2
Version: 2.2.6-1
Severity: serious
User: reproducible-builds@lists.alioth.debian.org
Usertags: timestamps fileordering
X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org

Your package fails to build in current sid.
This usually means that you should quote CPPFLAGS before passing it
over.

Tail of the build log:

ld --parallel
   dh_testdir -O--parallel
   dh_auto_configure -O--parallel
   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/bowtie2-2.2.6'
dh_auto_build -- EXTRA_FLAGS=-Wl,-z,relro CPPFLAGS=-Wdate-time 
-D_FORTIFY_SOURCE=2 WITH_TBB=1
        make -j18 EXTRA_FLAGS=-Wl,-z,relro CPPFLAGS=-Wdate-time 
-D_FORTIFY_SOURCE=2 WITH_TBB=1
make: invalid option -- 'D'
make: invalid option -- '_'
make: invalid option -- 'F'
Usage: make [options] [target] ...
Options:
  -b, -m                      Ignored for compatibility.
  -B, --always-make           Unconditionally make all targets.
  -C DIRECTORY, --directory=DIRECTORY
                              Change to DIRECTORY before doing anything.
  -d                          Print lots of debugging information.
  --debug[=FLAGS]             Print various types of debugging information.
  -e, --environment-overrides
                              Environment variables override makefiles.
  --eval=STRING               Evaluate STRING as a makefile statement.
  -f FILE, --file=FILE, --makefile=FILE
                              Read FILE as a makefile.
  -h, --help                  Print this message and exit.
  -i, --ignore-errors         Ignore errors from recipes.
  -I DIRECTORY, --include-dir=DIRECTORY
                              Search DIRECTORY for included makefiles.
  -j [N], --jobs[=N]          Allow N jobs at once; infinite jobs with no arg.
  -k, --keep-going            Keep going when some targets can't be made.
  -l [N], --load-average[=N], --max-load[=N]
                              Don't start multiple jobs unless load is below N.
  -L, --check-symlink-times   Use the latest mtime between symlinks and target.
  -n, --just-print, --dry-run, --recon
                              Don't actually run any recipe; just print them.
  -o FILE, --old-file=FILE, --assume-old=FILE
                              Consider FILE to be very old and don't remake it.
  -O[TYPE], --output-sync[=TYPE]
                              Synchronize output of parallel jobs by TYPE.
  -p, --print-data-base       Print make's internal database.
  -q, --question              Run no recipe; exit status says if up to date.
  -r, --no-builtin-rules      Disable the built-in implicit rules.
  -R, --no-builtin-variables  Disable the built-in variable settings.
  -s, --silent, --quiet       Don't echo recipes.
  -S, --no-keep-going, --stop
                              Turns off -k.
  -t, --touch                 Touch targets instead of remaking them.
  --trace                     Print tracing information.
  -v, --version               Print the version number of make and exit.
  -w, --print-directory       Print the current directory.
  --no-print-directory        Turn off -w, even if it was turned on implicitly.
  -W FILE, --what-if=FILE, --new-file=FILE, --assume-new=FILE
                              Consider FILE to be infinitely new.
  --warn-undefined-variables  Warn when an undefined variable is referenced.

This program built for x86_64-pc-linux-gnu
Report bugs to <bug-m...@gnu.org>
dh_auto_build: make -j18 EXTRA_FLAGS=-Wl,-z,relro CPPFLAGS=-Wdate-time 
-D_FORTIFY_SOURCE=2 WITH_TBB=1 returned exit code 2
debian/rules:21: recipe for target 'override_dh_auto_build' failed
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory '/build/bowtie2-2.2.6'
debian/rules:18: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2

-- 
regards,
                        Mattia Rizzolo

GPG Key: 66AE 2B4A FCCF 3F52 DA18  4D18 4B04 3FCD B944 4540      .''`.
more about me:  http://mapreri.org                              : :'  :
Launchpad user: https://launchpad.net/~mapreri                  `. `'`
Debian QA page: https://qa.debian.org/developer.php?login=mattia  `-

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