Source: bcftools
Version: 1.2-2
Severity: serious
Justification: fails to build from source
Usertags: ftbfs

Dear Maintainer,

bcftools fails to build from source in unstable/amd64:


  cc -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong 
-Wformat -Werror=format-security -g -Wall -Wc++-compat -O2 
-DPLUGINPATH=\"/usr/lib/x86_64-linux-gnu/bcftools\" -DUSE_GPL  -I. 
-I/usr/include vcfsom.c -o vcfsom.o
  vcfmerge.c:424:6: error: conflicting types for 'bcf_hdr_merge'
   void bcf_hdr_merge(bcf_hdr_t *hw, const bcf_hdr_t *hr, const char 
*clash_prefix, int force_samples)
  In file included from vcfmerge.c:30:0:
  /usr/include/htslib/vcf.h:407:16: note: previous declaration of 
'bcf_hdr_merge' was here
       bcf_hdr_t *bcf_hdr_merge(bcf_hdr_t *dst, const bcf_hdr_t *src);
  vcfmerge.c: In function 'bcf_hdr_merge':
  vcfmerge.c:427:5: warning: 'bcf_hdr_combine' is deprecated: Please use 
bcf_hdr_merge instead [-Wdeprecated-declarations]
       int ret = bcf_hdr_combine(hw, hr);
  In file included from vcfmerge.c:30:0:
  /usr/include/htslib/vcf.h:391:9: note: declared here
       int bcf_hdr_combine(bcf_hdr_t *dst, const bcf_hdr_t *src) 
HTS_DEPRECATED("Please use bcf_hdr_merge instead");
  Makefile:90: recipe for target 'vcfmerge.o' failed
  make[1]: *** [vcfmerge.o] Error 1
  make[1]: *** Waiting for unfinished jobs....
  make[1]: Leaving directory 
  dh_auto_build: make -j9 returned exit code 2
  debian/rules:15: recipe for target 'build' failed
  make: *** [build] Error 2


The full build log is attached.


     : :'  :     Chris Lamb
     `. `'` /

Attachment: bcftools.1.2-2.unstable.amd64.log.txt.gz
Description: Binary data

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