Source: r-cran-rms
Version: 4.5-0-1
Severity: serious
Justification: fails to build from source
User: reproducible-builds@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-builds@lists.alioth.debian.org

Dear Maintainer,

r-cran-rms fails to build from source in unstable/amd64:

  [..]

  Unpacking r-cran-littler (0.3.0-3) ...
  Selecting previously unselected package littler.
  Preparing to unpack .../littler_0.3.0-3_all.deb ...
  Unpacking littler (0.3.0-3) ...
  Selecting previously unselected package r-cran-pkgkitten.
  Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ...
  Unpacking r-cran-pkgkitten (0.1.3-1) ...
  Selecting previously unselected package r-cran-rcpp.
  Preparing to unpack .../r-cran-rcpp_0.12.5-1_amd64.deb ...
  Unpacking r-cran-rcpp (0.12.5-1) ...
  Selecting previously unselected package r-cran-plyr.
  Preparing to unpack .../r-cran-plyr_1.8.3-2_amd64.deb ...
  Unpacking r-cran-plyr (1.8.3-2) ...
  Selecting previously unselected package r-cran-magrittr.
  Preparing to unpack .../r-cran-magrittr_1.5-3_amd64.deb ...
  Unpacking r-cran-magrittr (1.5-3) ...
  Selecting previously unselected package r-cran-stringi.
  Preparing to unpack .../r-cran-stringi_1.0-1-1_amd64.deb ...
  Unpacking r-cran-stringi (1.0-1-1) ...
  Selecting previously unselected package r-cran-stringr.
  Preparing to unpack .../r-cran-stringr_1.0.0-1_all.deb ...
  Unpacking r-cran-stringr (1.0.0-1) ...
  Selecting previously unselected package r-cran-reshape2.
  Preparing to unpack .../r-cran-reshape2_1.4-1_amd64.deb ...
  Unpacking r-cran-reshape2 (1.4-1) ...
  Selecting previously unselected package r-cran-dichromat.
  Preparing to unpack .../r-cran-dichromat_2.0.0-3_all.deb ...
  Unpacking r-cran-dichromat (2.0.0-3) ...
  Selecting previously unselected package r-cran-colorspace.
  Preparing to unpack .../r-cran-colorspace_1.2-4-1_amd64.deb ...
  Unpacking r-cran-colorspace (1.2-4-1) ...
  Selecting previously unselected package r-cran-munsell.
  Preparing to unpack .../r-cran-munsell_0.4.2-1_all.deb ...
  Unpacking r-cran-munsell (0.4.2-1) ...
  Selecting previously unselected package r-cran-labeling.
  Preparing to unpack .../r-cran-labeling_0.3-1_all.deb ...
  Unpacking r-cran-labeling (0.3-1) ...
  Selecting previously unselected package r-cran-scales.
  Preparing to unpack .../r-cran-scales_0.3.0-1_amd64.deb ...
  Unpacking r-cran-scales (0.3.0-1) ...
  Selecting previously unselected package r-cran-ggplot2.
  Preparing to unpack .../r-cran-ggplot2_2.1.0-3_all.deb ...
  Unpacking r-cran-ggplot2 (2.1.0-3) ...
  Selecting previously unselected package r-cran-gridextra.
  Preparing to unpack .../r-cran-gridextra_2.2.1-1_all.deb ...
  Unpacking r-cran-gridextra (2.2.1-1) ...
  Selecting previously unselected package r-cran-data.table.
  Preparing to unpack .../r-cran-data.table_1.9.6-1_amd64.deb ...
  Unpacking r-cran-data.table (1.9.6-1) ...
  Selecting previously unselected package r-cran-hmisc.
  Preparing to unpack .../r-cran-hmisc_3.17-4-1_amd64.deb ...
  Unpacking r-cran-hmisc (3.17-4-1) ...
  Selecting previously unselected package r-cran-sparsem.
  Preparing to unpack .../r-cran-sparsem_1.7-1_amd64.deb ...
  Unpacking r-cran-sparsem (1.7-1) ...
  Selecting previously unselected package r-cran-matrixmodels.
  Preparing to unpack .../r-cran-matrixmodels_0.4-1-1_all.deb ...
  Unpacking r-cran-matrixmodels (0.4-1-1) ...
  Selecting previously unselected package r-cran-quantreg.
  Preparing to unpack .../r-cran-quantreg_5.26-1_amd64.deb ...
  Unpacking r-cran-quantreg (5.26-1) ...
  Selecting previously unselected package r-cran-nlme.
  Preparing to unpack .../r-cran-nlme_3.1.128-2_amd64.deb ...
  Unpacking r-cran-nlme (3.1.128-2) ...
  Selecting previously unselected package r-cran-polspline.
  Preparing to unpack .../r-cran-polspline_1.1.12-2_amd64.deb ...
  Unpacking r-cran-polspline (1.1.12-2) ...
  Selecting previously unselected package r-cran-mvtnorm.
  Preparing to unpack .../r-cran-mvtnorm_1.0-5-2_amd64.deb ...
  Unpacking r-cran-mvtnorm (1.0-5-2) ...
  Selecting previously unselected package r-cran-zoo.
  Preparing to unpack .../r-cran-zoo_1.7-13-1_amd64.deb ...
  Unpacking r-cran-zoo (1.7-13-1) ...
  Selecting previously unselected package r-cran-sandwich.
  Preparing to unpack .../r-cran-sandwich_2.3-4-2_all.deb ...
  Unpacking r-cran-sandwich (2.3-4-2) ...
  Selecting previously unselected package r-cran-th.data.
  Preparing to unpack .../r-cran-th.data_1.0-7-2_amd64.deb ...
  Unpacking r-cran-th.data (1.0-7-2) ...
  Selecting previously unselected package r-cran-codetools.
  Preparing to unpack .../r-cran-codetools_0.2-14-2_all.deb ...
  Unpacking r-cran-codetools (0.2-14-2) ...
  Selecting previously unselected package r-cran-multcomp.
  Preparing to unpack .../r-cran-multcomp_1.4-5-1_all.deb ...
  Unpacking r-cran-multcomp (1.4-5-1) ...
  Selecting previously unselected package r-cran-foreign.
  Preparing to unpack .../r-cran-foreign_0.8.66-2_amd64.deb ...
  Unpacking r-cran-foreign (0.8.66-2) ...
  Selecting previously unselected package r-cran-nnet.
  Preparing to unpack .../r-cran-nnet_7.3-12-1_amd64.deb ...
  Unpacking r-cran-nnet (7.3-12-1) ...
  Processing triggers for man-db (2.7.5-1) ...
  Processing triggers for mime-support (3.60) ...
  Processing triggers for libc-bin (2.23-1) ...
  Processing triggers for systemd (230-5) ...
  Setting up zip (3.0-11) ...
  Setting up unzip (6.0-20) ...
  Setting up ucf (3.0036) ...
  Setting up libpaper1:amd64 (1.1.24+nmu4) ...
  
  Creating config file /etc/papersize with new version
  Setting up libpaper-utils (1.1.24+nmu4) ...
  Setting up xdg-utils (1.1.1-1) ...
  Setting up libgfortran3:amd64 (6.1.1-8) ...
  Setting up libblas-common (3.6.1-1) ...
  Setting up libblas3 (3.6.1-1) ...
  update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide 
/usr/lib/libblas.so.3 (libblas.so.3) in auto mode
  Setting up libpng16-16:amd64 (1.6.23-1) ...
  Setting up libfreetype6:amd64 (2.6.3-3+b1) ...
  Setting up fonts-dejavu-core (2.35-1) ...
  Setting up fontconfig-config (2.11.0-6.4) ...
  Setting up libfontconfig1:amd64 (2.11.0-6.4) ...
  Setting up libpixman-1-0:amd64 (0.33.6-1) ...
  Setting up libxau6:amd64 (1:1.0.8-1) ...
  Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ...
  Setting up libxcb1:amd64 (1.11.1-1) ...
  Setting up libx11-data (2:1.6.3-1) ...
  Setting up libx11-6:amd64 (2:1.6.3-1) ...
  Setting up libxcb-render0:amd64 (1.11.1-1) ...
  Setting up libxcb-shm0:amd64 (1.11.1-1) ...
  Setting up libxext6:amd64 (2:1.3.3-1) ...
  Setting up libxrender1:amd64 (1:0.9.9-2) ...
  Setting up libcairo2:amd64 (1.14.6-1+b1) ...
  Setting up libcurl3:amd64 (7.47.0-1) ...
  Setting up x11-common (1:7.7+15) ...
  update-rc.d: warning: start and stop actions are no longer supported; falling 
back to defaults
  invoke-rc.d: could not determine current runlevel
  invoke-rc.d: policy-rc.d denied execution of start.
  Setting up libice6:amd64 (2:1.0.9-1+b1) ...
  Setting up libjpeg62-turbo:amd64 (1:1.5.0-1) ...
  Setting up liblapack3 (3.6.1-1) ...
  update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide 
/usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
  Setting up fontconfig (2.11.0-6.4) ...
  Regenerating fonts cache... done.
  Setting up libthai-data (0.1.25-1) ...
  Setting up libdatrie1:amd64 (0.2.10-2) ...
  Setting up libthai0:amd64 (0.1.25-1) ...
  Setting up libpango-1.0-0:amd64 (1.40.1-1) ...
  Setting up libgraphite2-3:amd64 (1.3.8-1) ...
  Setting up libharfbuzz0b:amd64 (1.2.6-2) ...
  Setting up libpangoft2-1.0-0:amd64 (1.40.1-1) ...
  Setting up libpangocairo-1.0-0:amd64 (1.40.1-1) ...
  Setting up libsm6:amd64 (2:1.2.2-1+b1) ...
  Setting up libtcl8.6:amd64 (8.6.5+dfsg-2) ...
  Setting up libjbig0:amd64 (2.1-3.1) ...
  Setting up libtiff5:amd64 (4.0.6-1) ...
  Setting up libxft2:amd64 (2.3.2-1) ...
  Setting up libxss1:amd64 (1:1.2.2-1) ...
  Setting up libtk8.6:amd64 (8.6.5-1) ...
  Setting up libxt6:amd64 (1:1.1.5-1) ...
  Setting up openssl (1.0.2h-1) ...
  Setting up ca-certificates (20160104) ...
  Setting up r-base-core (3.3.1-1) ...
  
  Creating config file /etc/R/Renviron with new version
  Setting up libgfortran-5-dev:amd64 (5.4.0-6) ...
  Setting up gfortran-5 (5.4.0-6) ...
  Setting up gfortran (4:5.3.1-3) ...
  update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in 
auto mode
  update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in 
auto mode
  Setting up libblas-dev (3.6.1-1) ...
  update-alternatives: using /usr/lib/libblas/libblas.so to provide 
/usr/lib/libblas.so (libblas.so) in auto mode
  Setting up liblapack-dev (3.6.1-1) ...
  update-alternatives: using /usr/lib/lapack/liblapack.so to provide 
/usr/lib/liblapack.so (liblapack.so) in auto mode
  Setting up libtinfo-dev:amd64 (6.0+20160319-2+b1) ...
  Setting up libncurses5-dev:amd64 (6.0+20160319-2+b1) ...
  Setting up libreadline6-dev:amd64 (6.3-8+b4) ...
  Setting up libreadline-dev:amd64 (6.3-8+b4) ...
  Setting up libjpeg62-turbo-dev:amd64 (1:1.5.0-1) ...
  Setting up libjpeg-dev (1:1.5.0-1) ...
  Setting up libpcre16-3:amd64 (2:8.38-3.1) ...
  Setting up libpcre32-3:amd64 (2:8.38-3.1) ...
  Setting up libpcrecpp0v5:amd64 (2:8.38-3.1) ...
  Setting up libpcre3-dev:amd64 (2:8.38-3.1) ...
  Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2+b1) ...
  Setting up libpng-dev:amd64 (1.6.23-1) ...
  Setting up libbz2-dev:amd64 (1.0.6-8) ...
  Setting up liblzma-dev:amd64 (5.1.1alpha+20120614-2.1) ...
  Setting up icu-devtools (55.1-7) ...
  Setting up libicu-dev:amd64 (55.1-7) ...
  Setting up cdbs (0.4.142) ...
  Setting up r-base-dev (3.3.1-1) ...
  Setting up r-cran-chron (2.3-47-1) ...
  Setting up r-cran-lattice (0.20-33-1) ...
  Setting up r-cran-cluster (2.0.4-1) ...
  Setting up r-cran-matrix (1.2-6-1) ...
  Setting up r-cran-survival (2.39-5-1) ...
  Setting up r-cran-formula (1.2-1-1) ...
  Setting up r-cran-rpart (4.1-10-1) ...
  Setting up r-cran-rcolorbrewer (1.1-2-1) ...
  Setting up r-cran-latticeextra (0.6-28-2) ...
  Setting up r-cran-acepack (1.3.3.3-2) ...
  Setting up r-cran-digest (0.6.9-1) ...
  Setting up r-cran-gtable (0.1.2-1.1) ...
  Setting up r-cran-mass (7.3-45-1) ...
  Setting up r-cran-proto (0.3-10-1) ...
  Setting up r-cran-littler (0.3.0-3) ...
  Setting up littler (0.3.0-3) ...
  Setting up r-cran-pkgkitten (0.1.3-1) ...
  Setting up r-cran-rcpp (0.12.5-1) ...
  Setting up r-cran-plyr (1.8.3-2) ...
  Setting up r-cran-magrittr (1.5-3) ...
  Setting up r-cran-stringi (1.0-1-1) ...
  Setting up r-cran-stringr (1.0.0-1) ...
  Setting up r-cran-reshape2 (1.4-1) ...
  Setting up r-cran-dichromat (2.0.0-3) ...
  Setting up r-cran-colorspace (1.2-4-1) ...
  Setting up r-cran-munsell (0.4.2-1) ...
  Setting up r-cran-labeling (0.3-1) ...
  Setting up r-cran-scales (0.3.0-1) ...
  Setting up r-cran-ggplot2 (2.1.0-3) ...
  Setting up r-cran-gridextra (2.2.1-1) ...
  Setting up r-cran-data.table (1.9.6-1) ...
  Setting up r-cran-hmisc (3.17-4-1) ...
  Setting up r-cran-sparsem (1.7-1) ...
  Setting up r-cran-matrixmodels (0.4-1-1) ...
  Setting up r-cran-quantreg (5.26-1) ...
  Setting up r-cran-nlme (3.1.128-2) ...
  Setting up r-cran-polspline (1.1.12-2) ...
  Setting up r-cran-mvtnorm (1.0-5-2) ...
  Setting up r-cran-zoo (1.7-13-1) ...
  Setting up r-cran-sandwich (2.3-4-2) ...
  Setting up r-cran-th.data (1.0-7-2) ...
  Setting up r-cran-codetools (0.2-14-2) ...
  Setting up r-cran-multcomp (1.4-5-1) ...
  Setting up r-cran-foreign (0.8.66-2) ...
  Setting up r-cran-nnet (7.3-12-1) ...
  Setting up r-cran-rms-build-deps (4.5-0-1) ...
  Processing triggers for libc-bin (2.23-1) ...
  Processing triggers for systemd (230-5) ...
  Processing triggers for ca-certificates (20160104) ...
  Updating certificates in /etc/ssl/certs...
  173 added, 0 removed; done.
  Running hooks in /etc/ca-certificates/update.d...
  done.
  
  
**************************************************************************************
  ** Environment                                                                
      **
  
**************************************************************************************
  
  
PATH=/home/lamby/git/projects/dotfiles/dotfiles/..//bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
  HOSTNAME=7863c076fddf
  TERM=xterm
  PAGER=more
  DISPLAY=:0
  DOCKER_IMAGE=lamby-debian-sid
  DEB_BUILD_OPTIONS=parallel=9
  PIP_DOWNLOAD_CACHE=/home/lamby/.cache/pip
  HOME=/home/lamby
  LOGNAME=lamby
  SHLVL=1
  PWD=/home/lamby/temp/cdt.20160705133101.loz88ZF8Am.r-cran-rms/r-cran-rms-4.5-0
  OLDPWD=/home/lamby/temp/cdt.20160705133101.loz88ZF8Am.r-cran-rms
  GPG_TTY=/dev/console
  QUILT_PATCHES=debian/patches
  QUILT_NO_DIFF_INDEX=1
  QUILT_REFRESH_ARGS=-p ab --no-timestamps --no-index
  DEBEMAIL=la...@debian.org
  DEBFULLNAME=Chris Lamb
  EDITOR=vim
  LESS=-cgiFx4M
  BLASTER=A220 I5 D1 H5 P330 T6
  _=/usr/bin/env
  
  
**************************************************************************************
  ** Building r-cran-rms 4.5-0-1 on amd64                                       
      **
  
**************************************************************************************
  
   dpkg-buildpackage -rfakeroot -D -us -uc -b
  dpkg-buildpackage: info: source package r-cran-rms
  dpkg-buildpackage: info: source version 4.5-0-1
  dpkg-buildpackage: info: source distribution unstable
  dpkg-buildpackage: info: source changed by Dirk Eddelbuettel <e...@debian.org>
   dpkg-source --before-build r-cran-rms-4.5-0
  dpkg-buildpackage: info: host architecture amd64
   fakeroot debian/rules clean
  dh_listpackages: Please specify the compatibility level in debian/compat
  dh_listpackages: Compatibility levels before 5 are no longer supported (level 
1 requested)
  CDBS WARNING:    simple-patchsys.mk is deprecated since 0.4.85 - please use 
source format 3.0 (quilt) instead
  test -x debian/rules
  /usr/bin/make -f debian/rules reverse-config
  make[1]: Entering directory 
'/home/lamby/temp/cdt.20160705133101.loz88ZF8Am.r-cran-rms/r-cran-rms-4.5-0'
  dh_listpackages: Please specify the compatibility level in debian/compat
  dh_listpackages: Compatibility levels before 5 are no longer supported (level 
1 requested)
  CDBS WARNING:    simple-patchsys.mk is deprecated since 0.4.85 - please use 
source format 3.0 (quilt) instead
  make[1]: 'reverse-config' is up to date.
  make[1]: Leaving directory 
'/home/lamby/temp/cdt.20160705133101.loz88ZF8Am.r-cran-rms/r-cran-rms-4.5-0'
  if [ "reverse-patches" = "reverse-patches" ]; then rm -f 
debian/stamp-patched; fi
  patches: 
  if [ "reverse-patches" != "reverse-patches" ]; then touch 
debian/stamp-patched; fi
  if [ "reverse-patches" != "reverse-patches" ] ; then \
        /usr/bin/make -f debian/rules update-config ; \
  fi
  for dir in debian/patches ; do \
      rm -f $dir/*.log ; \
  done
  dh_clean 
  dh_clean: Please specify the compatibility level in debian/compat
  /usr/share/cdbs/1/rules/debhelper.mk:217: recipe for target 'clean' failed
  make: *** [clean] Error 2

  [..]

The full build log is attached.


Regards,

-- 
      ,''`.
     : :'  :     Chris Lamb
     `. `'`      la...@debian.org / chris-lamb.co.uk
       `-

Attachment: r-cran-rms.4.5-0-1.unstable.amd64.log.txt.gz
Description: Binary data

_______________________________________________
Reproducible-builds mailing list
Reproducible-builds@lists.alioth.debian.org
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/reproducible-builds

Reply via email to