hello,
I'm joining data from several sources and I'm trying to output a
unique row based on a number of columns, I'm using an aggregate
operation, which is terribly slow. I wonder how you guys deal with
this issue.

I might got it wrong but I think there was a "DistinctOperation"
check this link 
http://ayende.com/Blog/archive/2007/08/04/Rhino.ETL-Status-Report--Joins-Distinct-amp-Engine-work.aspx
...

which is now abscent ...

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