Hi All,
Here is some info and links:
In general Search for bio-informatics, you will find more links.
Check these links:
http://www.ohsu.edu/bicc-informatics/ms/coursedesc.shtml
http://www.ohsu.edu/bicc-informatics/faculty/dubay.shtml
http://bdi.cse.ogi.edu/
MINF 572 Bioinformatics Lab
1 credit, fall term, Dr. C. Dubay.
This course is designed to supplement the MINF 520 course. It provides hands
on use of bioinformatics tools to solve biomedical research problems. The
course may also be taken on its own by students primarily interested in
learning to use bioinformatics tools and not interested in the survey of the
field given in MINF 520.
MINF 573 Bioinformatics II: Topics in Bioinformatics
3 credits, winter term, Dr. C. Dubay.
The topics in bioinformatics course takes areas of interest to the class
identified by participants (often as the result of projects done in Fall
term MINF571 course), and drills down into these areas presenting current
research and development. Topics are presented in terms of their historical
development, current literature, and future directions. Presentations
include 'Journal Club' style reviews of current literature on the topic
presented by student in class. Guest lectures providing demonstrations of
bioinformatics tools in the topic will be given by OHSU and other area
researchers who are using those tools to answer biomedical and computer
science research questions. Examples of topic areas include: DNA micro-array
technology, bio-sequence analysis, functional genomics, data
warehousing/data mining, genetic linkage analysis, Web and Internet based
software development, etc.
Prerequisites: Bioinformatics I
MINF 575 Bioinformatics III: Bioinformatic Systems Development
3 credits, spring term, Dr. C. Dubay.
The bioinformatic systems development course extends the in-depth coverage
of topics in the Winter MINF 573 topics course by having the class develop
information systems based on selected topics from the previous term. The
information systems might range from simple Web pages, to bioinformatic
tools, to database management systems. The course will provide an overview
of software development best-practices and methodologies. Emphasis will be
placed on development of functionality prevalent in bioinformatic tools,
such as: database interoperability, client/server and distributed computing
designs, visual user interfaces, etc. The paradigm for the course is that of
a software development project based on the chosen topic(s). Students will
complete system requirements gathering and high level design tasks for the
topic areas based on interaction with the targeted user base for the
software (e.g. people working on research projects involving the analysis of
sequence data). These specifications will be used to implement prototype
systems based on commercial software and/or software developed by the group.
Examples of systems which might be prototyped include: data warehouses for
laboratory data, Internet information resource interoperability, expression
data mining software, a functional genomics local information server, etc.
Prerequisites: Bioinformatics II
- Siraj Shaik
-----Original Message-----
From: Gornik, Davor [mailto:[EMAIL PROTECTED]]
Sent: Friday, March 30, 2001 1:10 PM
To: PREMKUMAR, N [Non-Pharmacia/8042]; '[EMAIL PROTECTED]'
Subject: RE: (ROSE) OBJECT - RELATIONAL Database Modeling
Lets go for the first 3. Do not know the answer to the last two.
Davor
-----Original Message-----
From: PREMKUMAR, N [Non-Pharmacia/8042]
[mailto:[EMAIL PROTECTED]]
Sent: Friday, March 30, 2001 11:24 AM
To: '[EMAIL PROTECTED]'
Subject: (ROSE) OBJECT - RELATIONAL Database Modeling
Hi All,
I have to represent complex-biology-data in a database that would
require more abstractions to be built-in so that the db would answer all the
generic queries.
Can anyone tell me about:
* the advantages of using OBJECT-RELATIONAL features in database
in terms of application-coding,
generic-context-related-search etc.
dg> ORDBMS will give you the ability to be more flexible in defining your
tables by using domains, user defined data types, etc. however do not expect
to be able to store multidimensional data with less effort than in RDBMS.
The ORDBMS offer more possibilities for relationships between tables.
Storing bio-data (and here i do not know about the kind of data you are
talking about - bio is huge) always depends on some primitive factors:
amount of data, size of data, type (or kind) of data, etc. - there can not
be an overall suggestion to go for ORDBMS, OODBMS, or even an RDMBS, which
would still be the first choice in 90% of cases.
* to what extent oracle supports ORDB functionalities.
Besically the support of ORDBMS is the same at all of the major companies.
The offer some typing possibilities, and some additional relationships. They
offer inheritance, etc. Do not forget that using any of these with huge
amount of data costs huge amount of time.
* to what extent RationalRose supports ORDB designing.
Rational Rose supports user defined domains
* Any sample-implementations (app-side and db-side ) available in
public-domain?
do not know.
* Any helpful sites .. regarding this.
sorry
Thanks verymuch in advance
Prem
-----Original Message-----
From: Patrick Kennedy [mailto:[EMAIL PROTECTED]]
Sent: 30 March 2001 8:06
To: R Thirunavukkarasu; [EMAIL PROTECTED]
Subject: Re: (ROSE) Primary Key in Data modeler
Assumming you have 2001 (feature did not exist yet in 2000e)
right click on the attribute in question in the Rose
Browser,
Data Modeler, Part of object Identity. It will now be used
as the PK when you transform.
Patrick Kennedy
Rational Support
On Mar 29, 17:23, R Thirunavukkarasu wrote:
> Subject: (ROSE) Primary Key in Data modeler
>
> Hi all,
>
> While transforming a package from logical view to
> schema, Rose adds primary key for each table. Instead
> I want to define one of the attributes in the class as
> the identifier and use that as primary key. Can
> anybody tell how to change this option in Rose?
>
> Thanks in advance
>
> R.Thiru
>
> __________________________________________________
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> Get email at your own domain with Yahoo! Mail.
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>-- End of excerpt from R Thirunavukkarasu
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