Hi Gregory Thanks for response. I am using gcc version 4.0.1 (Apple Computer, Inc. build 5250)
The full response to gcc -v is: Using built-in specs. Target: i686-apple-darwin8 Configured with: /private/var/tmp/gcc/gcc-5250.obj~20/src/configure --disable-checking -enable-werror --prefix=/usr --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/ --with-gxx-include-dir=/include/c++/4.0.0 --build=powerpc-apple-darwin8 --with-arch=pentium-m --with-tune=prescott --program-prefix= --host=i686-apple-darwin8 --target=i686-apple-darwin8 Thread model: posix gcc version 4.0.1 (Apple Computer, Inc. build 5250) ***************************************************** The full response I get to: 'sudo python setup.py install' is Password: RHOMES= [] Setting RHOMES to ['/Library/Frameworks/R.framework/Resources'] ### Using R verion 2.5.0 installed at /Library/Frameworks/R.framework/Resources ### RHOME= /Library/Frameworks/R.framework/Resources copying src/rpymodule.c -> src/rpymodule2050.c copying src/R_eval.c -> src/R_eval2050.c copying src/io.c -> src/io2050.c /Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-package s/numpy/lib/utils.py:89: DeprecationWarning: get_numpy_include is deprecated, use get_include DeprecationWarning) running install running build running build_py running build_ext building '_rpy2050' extension gcc -arch i386 -arch ppc -isysroot /Developer/SDKs/MacOSX10.4u.sdk -g -bundle -undefined dynamic_lookup build/temp.macosx-10.3-fat-2.5/src/rpymodule2050.o build/temp.macosx-10.3-fat-2.5/src/R_eval2050.o build/temp.macosx-10.3-fat-2.5/src/io2050.o -L/Library/Frameworks/R.framework/Resources/bin -L/Library/Frameworks/R.framework/Resources/lib -L/Library/Frameworks/R.framework/Resources/bin -L/Library/Frameworks/R.framework/Resources/lib -lR -o build/lib.macosx-10.3-fat-2.5/_rpy2050.so /usr/bin/ld: for architecture i386 /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libRblas.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libgfortran.2.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libgcc_s.1.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libreadline.5.2.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: Undefined symbols: _dgemm_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dsyrk_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _zgemm_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib ___divdc3 referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib ___muldc3 referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib _dcopy_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dtrsm_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _daxpy_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dswap_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _ddot_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dasum_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dscal_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dnrm2_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _drot_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _drotg_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _add_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _clear_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _history_truncate_file referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _read_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_attempted_completion_function referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_attempted_completion_over referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_basic_word_break_characters referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_callback_handler_install referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_callback_handler_remove referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_callback_read_char referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_completer_word_break_characters referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_completion_append_character referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_completion_matches referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_line_buffer referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_readline_name referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _stifle_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _tilde_expand referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _write_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib collect2: ld returned 1 exit status /usr/bin/ld: for architecture ppc /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libRblas.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libgfortran.2.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libgcc_s.1.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: warning can't open dynamic library: /Developer/SDKs/MacOSX10.4u.sdk/Library/Frameworks/R.framework/Versions/2.5/ Resources/lib/libreadline.5.2.dylib referenced from: /Library/Frameworks/R.framework/Resources/lib/libR.dylib (checking for undefined symbols may be affected) (No such file or directory, errno = 2) /usr/bin/ld: Undefined symbols: ___gcc_qadd referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib ___gcc_qdiv referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib _dgemm_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dsyrk_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _zgemm_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib ___gcc_qmul referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib ___gcc_qsub referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib ___floatdidf referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libgcc_s.1.dylib _dcopy_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dtrsm_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _daxpy_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dswap_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _ddot_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dasum_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dscal_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _dnrm2_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _drot_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _drotg_ referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libRblas.dylib _add_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _clear_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _history_truncate_file referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _read_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_attempted_completion_function referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_attempted_completion_over referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_basic_word_break_characters referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_callback_handler_install referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_callback_handler_remove referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_callback_read_char referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_completer_word_break_characters referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_completion_append_character referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_completion_matches referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_line_buffer referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _rl_readline_name referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _stifle_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _tilde_expand referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib _write_history referenced from libR expected to be defined in /Library/Frameworks/R.framework/Versions/2.5/Resources/lib/libreadline.5.2.d ylib collect2: ld returned 1 exit status lipo: can't open input file: /var/tmp//ccB5abTb.out (No such file or directory) error: command 'gcc' failed with exit status 1 Sorry for mass of text. Any help greatly appreciated. Best mark > > Hi Mark, > > I regularly use rpy on my MacBookPro. What compiler's are you using? > > (Ie > > gcc -v > > ) > > -G > > On Jul 31, 2007, at 3:34PM , Mark Thomas wrote: > >> Hi >> >> I have spent most of today trying to install rpy on my Mac >> (osx10.4.10). I >> have python 2.5.1 and R version 2.5.0 (2007-04-23). Both work fine; >> R was >> installed using the Precompiled binary distribution, python was >> installed >> using the Pre-built packages installer from http://www.pythonmac.org/. >> >> Has anybody ever managed to install rpy under these circumstances? >> >> Any help gratefully received. >> >> Many thanks >> >> Mark ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. 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