2008/8/7 Peter <[EMAIL PROTECTED]>:
> On Thu, Aug 7, 2008 at 4:49 PM, Laurent Gautier <[EMAIL PROTECTED]> wrote:
>> It is looking like the setup script is too picky.
>>
>> The following patch in setup.py should make work:
>>
>>
>>
>> Index: setup.py
>> ===================================================================
>> --- setup.py (revision 614)
>> +++ setup.py (working copy)
>> @@ -60,6 +60,9 @@
>> rconfig = rconfig.strip()
>> rconfig_m = re.match('^(-L.+) (-l.+)$', rconfig)
>> if rconfig_m is None:
>> + # MacOSX
>> + rconfig_m = re.match('^(-F.+) (-framework.+)$', rconfig)
>> + if rconfig_m is None:
>> raise Exception(cmd + '\nreturned\n' + rconfig)
>> return rconfig_m.groups()
>
> I added those three lines by hand, and then it does actually try and
> do the build - but fails:
>
> $ python setup.py build
> running build
> running build_py
> creating build
> creating build/lib.macosx-10.3-i386-2.5
> creating build/lib.macosx-10.3-i386-2.5/rpy2
> copying rpy/__init__.py -> build/lib.macosx-10.3-i386-2.5/rpy2
> copying rpy/rpy_classic.py -> build/lib.macosx-10.3-i386-2.5/rpy2
> copying rpy/tests.py -> build/lib.macosx-10.3-i386-2.5/rpy2
> creating build/lib.macosx-10.3-i386-2.5/rpy2/rlike
> copying rpy/rlike/__init__.py -> build/lib.macosx-10.3-i386-2.5/rpy2/rlike
> copying rpy/rlike/container.py -> build/lib.macosx-10.3-i386-2.5/rpy2/rlike
> copying rpy/rlike/symbols.py -> build/lib.macosx-10.3-i386-2.5/rpy2/rlike
> creating build/lib.macosx-10.3-i386-2.5/rpy2/rlike/tests
> copying rpy/rlike/tests/__init__.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rlike/tests
> copying rpy/rlike/tests/test_container.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rlike/tests
> creating build/lib.macosx-10.3-i386-2.5/rpy2/robjects
> copying rpy/robjects/__init__.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects
> copying rpy/robjects/numpy.py -> build/lib.macosx-10.3-i386-2.5/rpy2/robjects
> creating build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/__init__.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRArray.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRDataFrame.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testREnvironment.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRFormula.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRFunction.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRObject.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRobjects.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> copying rpy/robjects/tests/testRVector.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/robjects/tests
> creating build/lib.macosx-10.3-i386-2.5/rpy2/rinterface
> copying rpy/rinterface/__init__.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface
> creating build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/__init__.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_EmbeddedR.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_EmbeddedR_multithreaded.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_Sexp.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_SexpClosure.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_SexpEnvironment.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_SexpVector.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> copying rpy/rinterface/tests/test_SexpVectorNumeric.py ->
> build/lib.macosx-10.3-i386-2.5/rpy2/rinterface/tests
> running build_ext
> building 'rpy2.rinterface.rinterface' extension
> creating build/temp.macosx-10.3-i386-2.5
> creating build/temp.macosx-10.3-i386-2.5/rpy
> creating build/temp.macosx-10.3-i386-2.5/rpy/rinterface
> gcc -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk
> -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd
> -fno-common -dynamic -DNDEBUG -g -O3 -DR_INTERFACE_PTRS=1
> -DCSTACK_DEFNS=1 -I/Library/Frameworks/R.framework/Resources/include
> -Irpy/rinterface
> -I/Library/Frameworks/Python.framework/Versions/2.5/include/python2.5
> -c rpy/rinterface/array.c -o
> build/temp.macosx-10.3-i386-2.5/rpy/rinterface/array.o
> rpy/rinterface/array.c:103: error: syntax error before '*' token
> rpy/rinterface/array.c: In function 'array_struct_get':
> rpy/rinterface/array.c:105: error: 'self' undeclared (first use in
> this function)
> rpy/rinterface/array.c:105: error: (Each undeclared identifier is
> reported only once
> rpy/rinterface/array.c:105: error: for each function it appears in.)
> rpy/rinterface/array.c:105: warning: initialization makes pointer from
> integer without a cast
> rpy/rinterface/array.c:103: error: syntax error before '*' token
> rpy/rinterface/array.c: In function 'array_struct_get':
> rpy/rinterface/array.c:105: error: 'self' undeclared (first use in
> this function)
> rpy/rinterface/array.c:105: error: (Each undeclared identifier is
> reported only once
> rpy/rinterface/array.c:105: error: for each function it appears in.)
> rpy/rinterface/array.c:105: warning: initialization makes pointer from
> integer without a cast
> lipo: can't figure out the architecture type of:
> /var/folders/oe/oes+MjT+GnSYc8VMX+jRQ++++TI/-Tmp-//ccQERlma.out
> error: command 'gcc' failed with exit status 1
Could it happen that gcc is confused by the multiple-lines declaration
of the function ?
rpy/rinterface/array.c:103: error: syntax error before '*' token
(don't ask me why it would choke on that one but not on any other)
> This is an intel Mac; I am assuming the default gcc is being used:
>
> $ gcc -v
> Using built-in specs.
> Target: i686-apple-darwin9
> Configured with: /var/tmp/gcc/gcc-5465~16/src/configure
> --disable-checking -enable-werror --prefix=/usr --mandir=/share/man
> --enable-languages=c,objc,c++,obj-c++
> --program-transform-name=/^[cg][^.-]*$/s/$/-4.0/
> --with-gxx-include-dir=/include/c++/4.0.0 --with-slibdir=/usr/lib
> --build=i686-apple-darwin9 --with-arch=apple --with-tune=generic
> --host=i686-apple-darwin9 --target=i686-apple-darwin9
> Thread model: posix
> gcc version 4.0.1 (Apple Inc. build 5465)
>
> What version of gcc are you using?
On Linux:
Using built-in specs.
Target: x86_64-linux-gnu
Configured with: ../src/configure -v
--enable-languages=c,c++,fortran,objc,obj-c++,treelang --prefix=/usr
--enable-shared --with-system-zlib --libexecdir=/usr/lib
--without-included-gettext --enable-threads=posix --enable-nls
--with-gxx-include-dir=/usr/include/c++/4.2 --program-suffix=-4.2
--enable-clocale=gnu --enable-libstdcxx-debug --enable-objc-gc
--enable-mpfr --enable-checking=release --build=x86_64-linux-gnu
--host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 4.2.3 (Ubuntu 4.2.3-2ubuntu7)
(I can't remember what I have to build the Win32 versions - and I'd
have to reboot).
> Thanks,
>
> Peter
>
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