Bugs item #2830385, was opened at 2009-07-31 17:53
Message generated for change (Tracker Item Submitted) made by jryge
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Category: None
Group: None
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: jesper ryge (jryge)
Assigned to: Nobody/Anonymous (nobody)
Summary: rpy 1.0.3 fails to build/install on intel mac os 10.5.7
Initial Comment:
try to install rpy 1 on intel mac os 10.5.7 with gcc 4.2 from xcode 3.1. R was
installed from source as framework and with --enable-R-shlib. python 2.6.2 was
installed from source (not framework and MACOSX_DEPLOYMENT_TARGET=10.5 set in
makefile).
rpy2 does install but i need rpy 1 to work. thos is the error message i get:
py-1.0.3 jr$ python setup.py build
RHOMES= []
DEBUG= True
Setting RHOMES to ['/Library/Frameworks/R.framework/Resources']
### Using R verion 2.9.1 installed at /Library/Frameworks/R.framework/Resources
###
RHOME= /Library/Frameworks/R.framework/Resources
copying src/rpymodule.c -> src/rpymodule2091.c
copying src/R_eval.c -> src/R_eval2091.c
copying src/io.c -> src/io2091.c
running build
running build_py
creating build
creating build/lib.macosx-10.5-i386-2.6
copying rpy.py -> build/lib.macosx-10.5-i386-2.6
copying rpy_io.py -> build/lib.macosx-10.5-i386-2.6
copying rpy_version.py -> build/lib.macosx-10.5-i386-2.6
copying rpy_tools.py -> build/lib.macosx-10.5-i386-2.6
copying rpy_options.py -> build/lib.macosx-10.5-i386-2.6
copying rpy_wintools.py -> build/lib.macosx-10.5-i386-2.6
running build_ext
building '_rpy2091' extension
creating build/temp.macosx-10.5-i386-2.6
creating build/temp.macosx-10.5-i386-2.6/src
gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
-DWITH_NUMERIC=3 -DPY_ARRAY_TYPES_PREFIX=PyArray_ -DRPY_SHNAME=_rpy2091
-DINIT_RPY=init_rpy2091 -UPRE_2_2
-I/Library/Frameworks/R.framework/Resources/include -Isrc
-I/usr/local/lib/python2.6/site-packages/numpy/core/include
-I/usr/local/include/python2.6 -c src/rpymodule2091.c -o
build/temp.macosx-10.5-i386-2.6/src/rpymodule2091.o
In file included from src/RPy.h:57,
from src/rpymodule2091.c:51:
/Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: warning:
function declaration isn't a prototype
In file included from src/rpymodule2091.c:51:
src/RPy.h:77:51: error: Rdevices.h: No such file or directory
src/rpymodule2091.c:1565: warning: initialization from incompatible pointer type
src/rpymodule2091.c:1568: warning: 'intargfunc' is deprecated
src/rpymodule2091.c:1568: warning: initialization from incompatible pointer type
src/rpymodule2091.c:1569: warning: 'intintargfunc' is deprecated
src/rpymodule2091.c:1569: warning: initialization from incompatible pointer type
src/rpymodule2091.c:1570: warning: initialization from incompatible pointer type
src/rpymodule2091.c: In function 'r_finalize':
src/rpymodule2091.c:1782: warning: implicit declaration of function
'Rf_KillAllDevices'
src/rpymodule2091.c:1788: warning: implicit declaration of function
'R_CleanTempDir'
src/rpymodule2091.c:1776: warning: unused variable 'tmpdir'
src/rpymodule2091.c:1775: warning: unused variable 'buf'
error: command 'gcc' failed with exit status 1
cheers,
jesper
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