"oligo" is loading fine from rpy2 here.
- What OS are you using ? (from the paths in the error message that's an
UNIX-like, but more details is sometimes helpful)
- Do you have several versions of R installed on your system ? (and rpy2
somehow calling a different one from the one you get when writting "R"
in your shell)
L.
Peng Yu wrote:
> On Sun, Sep 27, 2009 at 7:48 AM, Sean Davis <seand...@gmail.com> wrote:
>> On Sun, Sep 27, 2009 at 8:10 AM, Peng Yu <pengyu...@gmail.com> wrote:
>>> Hi,
>>>
>>> My rpy2 is of version 2.0.7.
>>>
>>> I got the following error when I load 'oligo'. Can somebody let me
>>> know how to fix the problem?
>>>
>>> Regards,
>>> Peng
>>>
>>>>>> from rpy2.robjects import r
>>>>>> r.library('oligo')
>>> Loading required package: oligoClasses
>>> Loading required package: Biobase
>>>
>>> Welcome to Bioconductor
>>>
>>> Vignettes contain introductory material. To view, type
>>> 'openVignette()'. To cite Bioconductor, see
>>> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>>>
>>> Loading required package: preprocessCore
>>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>>> unable to load shared library
>>> '/usr/local/lib64/R/library/affxparser/libs/affxparser.so':
>>> /usr/local/lib64/R/library/affxparser/libs/affxparser.so: undefined
>>> symbol: R_NilValue
>>> Error: package/namespace load failed for 'oligo'
>> This looks like a problem from the R side. Can you load the oligo
>> package from R?
>
> Yes. Shall reinstall R in my system?
>
>> library(oligo)
> Loading required package: oligoClasses
> Loading required package: Biobase
>
> Welcome to Bioconductor
>
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: preprocessCore
> Welcome to oligo version 1.8.1
>
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