About the missing Rdevices.h, I remembered this thread. http://www.mail-archive.com/rpy-list@lists.sourceforge.net/msg01500.html
I also remember seeing SVN commit logs from Dirk mentioning a fix for the 2 digits minor version number (R is now 2.10). http://www.mail-archive.com/rpy-list@lists.sourceforge.net/msg02262.html HTH, L. LORCH, PATRICK wrote: > Hello Laurent, > Could you clarify what you suggested Laurent do? I am having the same > problem. I am running 10.5.8 not snow leopard with version 2.10 of R > (precompiled binary). I had to tweak the rpy_tools.py to recognize a 2 digit > version number by changing > version = re.search(" +([0-9]\.[0-9]\.[0-9])", output) > to > version = re.search(" +([0-9]\.[0-9][0-9]\.[0-9])", output) > then I ran python setup.py install in the rpy directory and I got something > like (full output below): > ... > lipo: can't figure out the architecture type of: > /var/folders/vP/vPQDhHcNGa0Y3eXI5irYBU+++TI/-Tmp-//cc0pcmsa.out > error: command 'gcc-4.0' failed with exit status 1 > > Can you explain how to search for the solution to this problem. In your > previous post, you said "You'll need to edit rpy's source for R to > compile; look for posts about that.", but I cannot figure out what you mean > by rpy's source for R. > > Thanks, > -Pat > > RHOMES= [] > DEBUG= True > Setting RHOMES to ['/Library/Frameworks/R.framework/Resources'] > ### Using R verion 2.10.0 installed at > /Library/Frameworks/R.framework/Resources ### > RHOME= /Library/Frameworks/R.framework/Resources > copying src/rpymodule.c -> src/rpymodule2100.c > copying src/R_eval.c -> src/R_eval2100.c > copying src/io.c -> src/io2100.c > running install > running build > running build_py > copying rpy_tools.py -> build/lib.macosx-10.3-fat-2.6 > running build_ext > building '_rpy2100' extension > gcc-4.0 -arch ppc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk > -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -O3 > -DRPY_SHNAME=_rpy2100 -DINIT_RPY=init_rpy2100 -UPRE_2_2 -UWITH_NUMERIC > -I/Library/Frameworks/R.framework/Resources/include -Isrc > -I/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c > src/rpymodule2100.c -o build/temp.macosx-10.3-fat-2.6/src/rpymodule2100.o > In file included from src/rpymodule2100.c:51: > src/RPy.h:77:51: error: Rdevices.h: No such file or directory > In file included from src/rpymodule2100.c:51: > src/RPy.h:77:51: error: Rdevices.h: No such file or directory > src/rpymodule2100.c:1565: warning: initialization from incompatible pointer > typesrc/rpymodule2100.c:1565: warning: initialization from incompatible > pointer type > src/rpymodule2100.c:1568: warning: ‘intargfunc’ is deprecated > src/rpymodule2100.c:1568: warning: initialization from incompatible pointer > type > src/rpymodule2100.c:1569: warning: ‘intintargfunc’ is deprecated > > src/rpymodule2100.c:1568: warning: ‘intargfunc’ is deprecated > src/rpymodule2100.c:1568: warning: initialization from incompatible pointer > type > src/rpymodule2100.c:1569: warning: ‘intintargfunc’ is deprecated > src/rpymodule2100.c:1569: warning: initialization from incompatible pointer > type > src/rpymodule2100.c:1570: warning: initialization from incompatible pointer > type > src/rpymodule2100.c:1569: warning: initialization from incompatible pointer > type > src/rpymodule2100.c:1570: warning: initialization from incompatible pointer > type > lipo: can't figure out the architecture type of: > /var/folders/vP/vPQDhHcNGa0Y3eXI5irYBU+++TI/-Tmp-//cc0pcmsa.out > error: command 'gcc-4.0' failed with exit status 1 > > > Patrick Lorch > Biological Sciences Dept. > Kent State University > 256 Cunningham Hall > Kent, OH 44242-0001 USA > O: 330-672-7888 Lab: 330-672-2514 > http://bioweb.biology.kent.edu/facultypages/lorch/lorch.html > > > Date: Fri, 06 Nov 2009 18:56:16 +0100 > From: Laurent Gautier <lgaut...@gmail.com> > Subject: Re: [Rpy] Problem Installing RPy on OSX > To: joran.el...@gmail.com > Cc: "RPy help, support and design discussion list" > <rpy-list@lists.sourceforge.net> > Message-ID: <4af46340.7030...@gmail.com> > Content-Type: text/plain; charset=windows-1252; format=flowed > > Wrong, wrong, wrong... I answered without reading the full details, and > your problem has _nothing_ to do with Rajarshi's issue. > > You are using rpy (not rpy2), and there were changes in the R source > (circa version 2.8, I think). You'll need to edit rpy's source for R to > compile; look for posts about that. > > > L. > > > Laurent Gautier wrote: >> Rajarshi reported a similar situation >> but the thread is likely interrupted until more is known about the >> Python version used. >> >> http://sourceforge.net/mailarchive/forum.php?thread_name=4AB5CBEC.8070409%40gmail.com&forum_name=rpy-list >> >> >> I currently do not have a Snow Leopard install to play with. >> >> >> L. >> >> >> >> >> Joran Elias wrote: >>> I'm not entirely comfortable in a unix shell, so when I have problems >>> installing stuff like this, it's usually fairly simple. But I've >>> poked around a bit and haven't solved it yet, so I thought I'd ask... >>> >>> I am trying to install RPy on a Mac running 10.6 (Snow Leopard). I >>> have Xcode installed and am using the os x pre installed version of >>> python (2.6 I believe). I have the precompiled binary of R 2.9.1, >>> which I understand should have been compiled with enable-R-shlib. >>> >>> When I run python setup.py install, I get the following: >>> >>> RHOMES= [] >>> DEBUG= True >>> Setting RHOMES to ['/Library/Frameworks/R.framework/Resources'] >>> ### Using R verion 2.9.1 installed at >>> /Library/Frameworks/R.framework/Resources ### >>> RHOME= /Library/Frameworks/R.framework/Resources >>> copying src/rpymodule.c -> src/rpymodule2091.c >>> copying src/R_eval.c -> src/R_eval2091.c >>> copying src/io.c -> src/io2091.c >>> running install >>> running build >>> running build_py >>> running build_ext >>> building '_rpy2091' extension >>> gcc-4.2 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv >>> -Os -Wall -Wstrict-prototypes -DENABLE_DTRACE -arch i386 -arch ppc >>> -arch x86_64 -pipe -DWITH_NUMERIC=3 -DPY_ARRAY_TYPES_PREFIX=PyArray_ >>> -DRPY_SHNAME=_rpy2091 -DINIT_RPY=init_rpy2091 -UPRE_2_2 >>> -I/Library/Frameworks/R.framework/Resources/include -Isrc >>> -I/Library/Python/2.6/site-packages/numpy-1.4.0.dev7542-py2.6-macosx-10.6-universal.egg/numpy/core/include >>> -I/System/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 >>> -c src/rpymodule2091.c -o >>> build/temp.macosx-10.6-universal-2.6/src/rpymodule2091.o >>> In file included from src/RPy.h:57, >>> from src/rpymodule2091.c:51: >>> /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: >>> warning: function declaration isn?t a prototype >>> In file included from src/rpymodule2091.c:51: >>> src/RPy.h:77:51: error: Rdevices.h: No such file or directory >>> src/rpymodule2091.c:1565: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1568: warning: ?intargfunc? is deprecated >>> src/rpymodule2091.c:1568: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1569: warning: ?intintargfunc? is deprecated >>> src/rpymodule2091.c:1569: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1570: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c: In function ?r_finalize?: >>> src/rpymodule2091.c:1782: warning: implicit declaration of function >>> ?Rf_KillAllDevices? >>> src/rpymodule2091.c:1788: warning: implicit declaration of function >>> ?R_CleanTempDir? >>> src/rpymodule2091.c:1776: warning: unused variable ?tmpdir? >>> src/rpymodule2091.c:1775: warning: unused variable ?buf? >>> In file included from src/RPy.h:57, >>> from src/rpymodule2091.c:51: >>> /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: >>> warning: function declaration isn?t a prototype >>> In file included from src/rpymodule2091.c:51: >>> src/RPy.h:77:51: error: Rdevices.h: No such file or directory >>> src/rpymodule2091.c:1565: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1568: warning: ?intargfunc? is deprecated >>> src/rpymodule2091.c:1568: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1569: warning: ?intintargfunc? is deprecated >>> src/rpymodule2091.c:1569: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1570: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c: In function ?r_finalize?: >>> src/rpymodule2091.c:1782: warning: implicit declaration of function >>> ?Rf_KillAllDevices? >>> src/rpymodule2091.c:1788: warning: implicit declaration of function >>> ?R_CleanTempDir? >>> src/rpymodule2091.c:1776: warning: unused variable ?tmpdir? >>> src/rpymodule2091.c:1775: warning: unused variable ?buf? >>> In file included from src/rpymodule2091.c:42: >>> /Library/Frameworks/R.framework/Resources/include/Rversion.h:9:29: >>> error: x86_64/Rversion.h: No such file or directory >>> src/rpymodule2091.c:43:28: error: missing binary operator before token >>> "(" >>> In file included from >>> /Library/Frameworks/R.framework/Resources/include/R.h:40, >>> from src/RPy.h:51, >>> from src/rpymodule2091.c:51: >>> /Library/Frameworks/R.framework/Resources/include/Rconfig.h:9:28: >>> error: x86_64/Rconfig.h: No such file or directory >>> In file included from src/RPy.h:57, >>> from src/rpymodule2091.c:51: >>> /Library/Frameworks/R.framework/Resources/include/R_ext/Rdynload.h:26: >>> warning: function declaration isn?t a prototype >>> In file included from src/RPy.h:71, >>> from src/rpymodule2091.c:51: >>> src/rpy_Rinterface.h:85: warning: function declaration isn?t a prototype >>> src/rpy_Rinterface.h:96: warning: function declaration isn?t a prototype >>> src/rpy_Rinterface.h:101: warning: function declaration isn?t a prototype >>> src/rpy_Rinterface.h:102: warning: function declaration isn?t a prototype >>> src/rpy_Rinterface.h:103: warning: function declaration isn?t a prototype >>> In file included from src/rpymodule2091.c:51: >>> src/RPy.h:77:51: error: Rdevices.h: No such file or directory >>> src/rpymodule2091.c:1565: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1568: warning: ?intargfunc? is deprecated >>> src/rpymodule2091.c:1568: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1569: warning: ?intintargfunc? is deprecated >>> src/rpymodule2091.c:1569: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1570: warning: initialization from incompatible >>> pointer type >>> src/rpymodule2091.c:1781:28: error: missing binary operator before >>> token "(" >>> src/rpymodule2091.c: In function ?r_finalize?: >>> src/rpymodule2091.c:1784: warning: implicit declaration of function >>> ?KillAllDevices? >>> src/rpymodule2091.c:1787:28: error: missing binary operator before >>> token "(" >>> lipo: can't open input file: >>> /var/folders/WA/WAQSKhXYF9eYDiqVddaOd++++TI/-Tmp-//ccoTLLAg.out (No >>> such file or directory) >>> error: command 'gcc-4.2' failed with exit status 1 >>> >>> Any ideas? >>> >>> Thanks! >>> >>> >>> Joran > > ------------------------------------------------------------------------------ > Let Crystal Reports handle the reporting - Free Crystal Reports 2008 30-Day > trial. 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