To minimize communication regarding failing unittests, I just uploaded a
2.1beta2 to SF (it will also be on bitbucket as soon as its
instabilities encountered since this morning stop). Not a clean sheet
yet, but that should be ~2-3 failing unit-tests.
I also fixed a PROTECT / UNPROTECT unbalance.
L.
On 3/14/10 6:32 AM, Laurent Gautier wrote:
> Not yet, not yet... but getting there. The segfault issues should be
> gone (thanks to an unusually long airport transit).
>
> Beside the usual "test not yet implemented", and unicode + numpy array
> issue, there should only be:
>
> - few things with the new NA types (and by the time people have read the
> doc, use them and the are about to complain about
>
> - testing for the interruption of R code (won't block the release anyway)
>
>
> You have an extra issue with pickling, which I do not observe here with
> Python 2.6.
> The traceback point to something that is not rpy2-specific, but a part
> of the Python stdlib:
>
> tmp_file = tempfile.NamedTemporaryFile()
>
> Your Python install might have issues.
>
>
>
> Laurent
>
>
>
> On 3/14/10 12:40 AM, Yaroslav Halchenko wrote:
>> should we expect all unittests to pass? ;)
>>
>> I am getting following with 1093:198d59806bee
>>
>> $> python2.6 -c 'import rpy2.tests, unittest; tr =
>> unittest.TextTestRunner(verbosity = 1); suite = rpy2.tests.suite();
>> tr.run(suite)'
>> ...F...Error in function (new = FALSE) : file choice cancelled
>> .......F..F............................F....................................Error:
>> unimplemented type 'char' in 'eval'
>> E....F...F..Loading required package: splines
>> ............Error in function (x) : object 'y' not found
>> ....Error in .Primitive("sum")(c("a", "b", "c", "d", "e", "f", "g",
>> "h", "i", :
>> invalid 'type' (character) of argument
>> .................Error in function (description, open = "", blocking =
>> FALSE, encoding = getOption("encoding")) :
>> cannot open the connection
>> In addition: Warning message:
>> In function (description, open = "", blocking = FALSE, encoding =
>> getOption("encoding")) :
>> cannot create fifo '/home/yoh/.tmp/RtmpGRWQ7r/Rf327b23c6', reason 'No
>> such file or directory'
>> E(/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py:61):
>> testPickle
>> 61 tmp_file = tempfile.NamedTemporaryFile()
>> (Pydb)
>> E.............................Error in .Primitive("[")(0:10, list("a",
>> "b", "c")) :
>> invalid subscript type 'list'
>> ..................................................................F.......................................
>>
>> ======================================================================
>> ERROR: testNACharactertoR
>> (rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
>> line 90, in testNACharactertoR
>> self.assertEquals(True, ri.baseenv["is.na"](na_character)[0])
>> RRuntimeError: Error: unimplemented type 'char' in 'eval'
>>
>>
>> ======================================================================
>> ERROR: testStr (rpy2.robjects.tests.testRObject.RObjectTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
>> line 30, in testStr
>> s = prt.__str__()
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/robject.py",
>> line 29, in __str__
>> tmp = self.__fifo(rpy2.rinterface.StrSexpVector(["", ]))
>> RRuntimeError: Error in function (description, open = "", blocking =
>> FALSE, encoding = getOption("encoding")) :
>> cannot open the connection
>>
>>
>> ======================================================================
>> ERROR: testPickle
>> (rpy2.robjects.tests.testRObject.RObjectPicklingTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
>> line 61, in testPickle
>> tmp_file = tempfile.NamedTemporaryFile()
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testRObject.py",
>> line 61, in testPickle
>> tmp_file = tempfile.NamedTemporaryFile()
>> File "/usr/lib/pymodules/python2.6/pydb/gdb.py", line 249, in
>> trace_dispatch_gdb
>> sys.exit()
>> SystemExit
>>
>> ======================================================================
>> FAIL: testInterruptR
>> (rpy2.rinterface.tests.test_EmbeddedR.EmbeddedRTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
>> line 107, in testInterruptR
>> self.assertFalse(ret_code is None) # Interruption failed
>> AssertionError
>>
>> ======================================================================
>> FAIL: testSetShowMessage
>> (rpy2.rinterface.tests.test_EmbeddedR.CallbacksTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
>> line 214, in testSetShowMessage
>> self.assertTrue(False) # no unit test (yet)
>> AssertionError
>>
>> ======================================================================
>> FAIL: testShowMessageWithError
>> (rpy2.rinterface.tests.test_EmbeddedR.CallbacksTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_EmbeddedR.py",
>> line 220, in testShowMessageWithError
>> self.assertTrue(False) # no unit test (yet)
>> AssertionError
>>
>> ======================================================================
>> FAIL: testGetItemLang
>> (rpy2.rinterface.tests.test_SexpVector.SexpVectorTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
>> line 241, in testGetItemLang
>> self.assertEquals(ri.LANGSXP, y.typeof)
>> AssertionError: 6 != 1
>>
>> ======================================================================
>> FAIL: testNARealtoR
>> (rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
>> line 77, in testNARealtoR
>> self.assertEquals(True, ri.baseenv["is.na"](na_real)[0])
>> AssertionError: True != False
>>
>> ======================================================================
>> FAIL: testRtoNAReal
>> (rpy2.rinterface.tests.test_SexpVector.NAValuesTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/rinterface/tests/test_SexpVector.py",
>> line 73, in testRtoNAReal
>> self.assertTrue(r_na_real is na_real)
>> AssertionError
>>
>> ======================================================================
>> FAIL: testVectorUnicodeCharacter
>> (rpy2.robjects.tests.testNumpyConversions.NumpyConversionsTestCase)
>> ----------------------------------------------------------------------
>> Traceback (most recent call last):
>> File
>> "/home/yoh/proj/rpy2/build/lib.linux-x86_64-2.6/rpy2/robjects/tests/testNumpyConversions.py",
>> line 53, in testVectorUnicodeCharacter
>> self.assertTrue(False) # arrays of unicode characters causing segfault
>> AssertionError
>>
>> ----------------------------------------------------------------------
>> Ran 265 tests in 2.699s
>>
>> FAILED (failures=7, errors=3)
>>
>>
>>
>> On Sat, 13 Mar 2010, Laurent Gautier wrote:
>>
>>> Hi,
>>
>>> rpy2-2.1beta is out. Stability issues since 2.1.0alpha3 were addressed.
>>> Source packages are available on bitbucket and sourceforge.
>>
>>> Win32 compilation, and eventually binaries, could come next and be
>>> available for the release candidate thanks to an anonymous patch
>>> contribution.
>>
>>
>>> Laurent
>>
>>> ------------------------------------------------------------------------------
>>>
>>> Download Intel® Parallel Studio Eval
>>> Try the new software tools for yourself. Speed compiling, find bugs
>>> proactively, and fine-tune applications for parallel performance.
>>> See why Intel Parallel Studio got high marks during beta.
>>> http://p.sf.net/sfu/intel-sw-dev
>>> _______________________________________________
>>> rpy-list mailing list
>>> rpy-list@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/rpy-list
>>
>>
>
------------------------------------------------------------------------------
Download Intel® Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
_______________________________________________
rpy-list mailing list
rpy-list@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/rpy-list
