For what it's worth, I noted the same bug a couple weeks ago. In case it didn't go through, I said:
I have installed rpy2 on this machine in the past and had no problems, but now I am unable to get rpy2 properly installed either using pip or source. I'm running OSX 10.9.5 (Mavericks), and R version 3.1.1 (2014-07-10) -- "Sock it to Me" (Platform: x86_64-apple-darwin13.1.0 (64-bit)). Both source and pip show similar errors. For example, when I try pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz I get the following traceback: ------------------------------------------------- Traceback (most recent call last): File "<string>", line 17, in <module> File "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py", line 275, in <module> ri_ext = getRinterface_ext() File "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py", line 189, in getRinterface_ext ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags'))) File "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py", line 135, in cmd_config output = output.strip() AttributeError: 'list' object has no attribute 'strip' ------------------------------------------------- (I used https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz because I was seeing a separate error before this, and while trying to find a solution to that one I saw the suggestion to use https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz. That eliminated the previous error but brought in the "strip" error.) On trying to install from source (rpy2 2.5.1) I get a similar error: ------------------------------------------------- ~/Downloads/rpy2-2.5.1 > python setup.py build install R version 3.1.1 (2014-07-10) -- "Sock it to Me" /Library/Frameworks/R.framework/Resources/bin/R CMD config --ldflags Traceback (most recent call last): File "setup.py", line 278, in <module> ri_ext = getRinterface_ext() File "setup.py", line 192, in getRinterface_ext ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags'))) File "setup.py", line 135, in cmd_config output = output.strip() AttributeError: 'list' object has no attribute 'strip' ------------------------------------------------- I made a guess that the offending line should be output[0].strip() but then I got the following error: ------------------------------------------------- Traceback (most recent call last): File "setup.py", line 280, in <module> ri_ext = getRinterface_ext() File "setup.py", line 206, in getRinterface_ext include_dirs.extend(args.I) TypeError: 'NoneType' object is not iterable ------------------------------------------------- Suggestions welcome. On Fri, Dec 12, 2014 at 12:33 PM, Laurent Gautier <lgaut...@gmail.com> wrote: > This might be a genuine bug. > > I opened an issue: > https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and > > 2014-12-12 7:21 GMT-05:00 Laurent Gautier <lgaut...@gmail.com>: >> >> Hi, >> >> This might be a bug in the install script. Consider opening an issue on >> bitbucket. >> >> Thanks, >> >> Laurent >> >> On Dec 12, 2014 3:57 AM, "Xinxin Peng" <fred...@gmail.com> wrote: >>> >>> Hi all, >>> >>> I have been trying to install rpy2-2.5.2 on a high performance computer >>> and run into the following errors: >>> >>> Traceback (most recent call last): >>> File "setup.py", line 275, in <module> >>> ri_ext = getRinterface_ext() >>> File "setup.py", line 189, in getRinterface_ext >>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags'))) >>> File "setup.py", line 135, in cmd_config >>> output = output.strip() >>> AttributeError: 'list' object has no attribute 'strip' >>> >>> >>> The python version is python2.7. And the R version is R3.1.1. >>> >>> Any suggestion is welcome. >>> >>> Thanks a lot. >>> >>> Best, >>> Xinxin >>> >>> >>> >>> >>> ------------------------------------------------------------------------------ >>> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server >>> from Actuate! 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