Hello,
I compiled R v 3.3.2 with openblas (single threaded version).
uname -a
>Linux dirac.chpc.utah.edu 3.10.0-327.36.3.el7.x86_64 #1 SMP Mon Oct 24
16:09:20 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux
gcc:
gcc version 4.8.5 20150623 (Red Hat 4.8.5-4) (GCC)
After installing the 2.9.0dev version of RPy2 (python 2.7.12) the tests
crashed:
python -m rpy2.tests -v
rpy2 version: 2.9.0dev
- built against R version: 3-3.2--71607
- running linked to R version: R version 3.3.2 (2016-10-31)
/uufs/
chpc.utah.edu/sys/installdir/python/2.7.12bb/lib/python2.7/site-packages/rpy2-2.9.0.dev0-py2.7-linux-x86_64.egg/rpy2/robjects/lib/ggplot2.py:67:
UserWarning: This was designed againt ggplot2 version 2.1.0 but you have
2.2.0
warnings.warn('This was designed againt ggplot2 version %s but you have
%s' % (TARGET_VERSION, ggplot2.__version__))
testCallErrorWhenEndedR (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase)
... ok
testConsolePrint (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testExternalPython (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ...
ok
testExternalPythonFromExpression
(rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testGet_initoptions (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ...
ok
testInitr (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testInterruptR (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testParse (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testParseError (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testParseIncompleteError
(rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testParseInvalidString (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase)
... ok
testParseUnicode (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ... ok
testRpyMemory (rinterface.tests.test_EmbeddedR.EmbeddedRTestCase) ...
Segmentation fault (core dumped)
Any idea what went wrong? Please let me know if you need more info.
Thanks,
Wim
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