I realize the clone-dest patch is unsupported, but I've updated it to the most recent git tree here, and included some tests:

https://github.com/josephmaher/rsync

I've also attached a patch for the current version of rsync in debian stable/trixie in case that is of any use to anyone...

Obviously, use at your own risk - I got stuck and had to ask claude.ai for advice at various points, so these changes include suggestions from claude.ai.

Joseph
Common subdirectories: rsync-3.4.1+ds1/debian and ../trixie4/rsync-3.4.1+ds1/debian
Common subdirectories: rsync-3.4.1+ds1/doc and ../trixie4/rsync-3.4.1+ds1/doc
diff -U3 rsync-3.4.1+ds1/generator.c ../trixie4/rsync-3.4.1+ds1/generator.c
--- rsync-3.4.1+ds1/generator.c	2026-05-20 20:19:47.000000000 -0400
+++ ../trixie4/rsync-3.4.1+ds1/generator.c	2026-05-20 20:18:25.730823635 -0400
@@ -968,7 +968,7 @@
 			best_match = j;
 			match_level = 2;
 		}
-		if (unchanged_attrs(cmpbuf, file, sxp)) {
+		if (alt_dest_type == CLONE_DEST || unchanged_attrs(cmpbuf, file, sxp)) {
 			best_match = j;
 			match_level = 3;
 			break;
@@ -994,9 +994,16 @@
 				goto got_nothing_for_ya;
 		}
 #ifdef SUPPORT_HARD_LINKS
-		if (alt_dest_type == LINK_DEST) {
-			if (!hard_link_one(file, fname, cmpbuf, 1))
-				goto try_a_copy;
+		if (alt_dest_type == LINK_DEST || alt_dest_type == CLONE_DEST) {
+			if (alt_dest_type == LINK_DEST) {
+				if (!hard_link_one(file, fname, cmpbuf, 1))
+					goto try_a_copy;
+			} else if (do_clone(cmpbuf, fname, file->mode) == 0) {
+				finish_transfer(fname, fname, cmpbuf, NULL, file, 1, 0);
+			} else {
+				rsyserr(FERROR_XFER, errno, "failed to clone %s to %s", cmpbuf, fname);
+				exit_cleanup(RERR_UNSUPPORTED);
+			}
 			if (atimes_ndx)
 				set_file_attrs(fname, file, sxp, NULL, 0);
 			if (preserve_hard_links && F_IS_HLINKED(file))
@@ -1110,7 +1117,7 @@
 
 	if (match_level == 3) {
 #ifdef SUPPORT_HARD_LINKS
-		if (alt_dest_type == LINK_DEST
+		if ((alt_dest_type == LINK_DEST || alt_dest_type == CLONE_DEST)
 #ifndef CAN_HARDLINK_SYMLINK
 		 && !S_ISLNK(file->mode)
 #endif
Common subdirectories: rsync-3.4.1+ds1/lib and ../trixie4/rsync-3.4.1+ds1/lib
Common subdirectories: rsync-3.4.1+ds1/m4 and ../trixie4/rsync-3.4.1+ds1/m4
diff -U3 rsync-3.4.1+ds1/Makefile.in ../trixie4/rsync-3.4.1+ds1/Makefile.in
--- rsync-3.4.1+ds1/Makefile.in	2026-05-20 20:19:47.000000000 -0400
+++ ../trixie4/rsync-3.4.1+ds1/Makefile.in	2026-05-20 20:18:42.473243691 -0400
@@ -53,7 +53,7 @@
 	popt/popthelp.o popt/poptparse.o popt/poptint.o
 OBJS=$(OBJS1) $(OBJS2) $(OBJS3) $(DAEMON_OBJ) $(LIBOBJ) @BUILD_ZLIB@ @BUILD_POPT@
 
-TLS_OBJ = tls.o syscall.o util2.o t_stub.o lib/compat.o lib/snprintf.o lib/permstring.o lib/sysxattrs.o @BUILD_POPT@
+TLS_OBJ = tls.o syscall.o util1.o util2.o t_stub.o lib/compat.o lib/snprintf.o lib/permstring.o lib/sysxattrs.o lib/wildmatch.o @BUILD_POPT@
 
 # Programs we must have to run the test cases
 CHECK_PROGS = rsync$(EXEEXT) tls$(EXEEXT) getgroups$(EXEEXT) getfsdev$(EXEEXT) \
@@ -171,7 +171,7 @@
 getfsdev$(EXEEXT): getfsdev.o
 	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ getfsdev.o $(LIBS)
 
-TRIMSLASH_OBJ = trimslash.o syscall.o util2.o t_stub.o lib/compat.o lib/snprintf.o
+TRIMSLASH_OBJ = trimslash.o syscall.o util1.o util2.o t_stub.o lib/compat.o lib/snprintf.o lib/wildmatch.o
 trimslash$(EXEEXT): $(TRIMSLASH_OBJ)
 	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(TRIMSLASH_OBJ) $(LIBS)
 
diff -U3 rsync-3.4.1+ds1/options.c ../trixie4/rsync-3.4.1+ds1/options.c
--- rsync-3.4.1+ds1/options.c	2026-05-20 20:19:47.000000000 -0400
+++ ../trixie4/rsync-3.4.1+ds1/options.c	2026-05-20 20:18:25.730823635 -0400
@@ -591,7 +591,7 @@
       OPT_INCLUDE, OPT_INCLUDE_FROM, OPT_MODIFY_WINDOW, OPT_MIN_SIZE, OPT_CHMOD,
       OPT_READ_BATCH, OPT_WRITE_BATCH, OPT_ONLY_WRITE_BATCH, OPT_MAX_SIZE,
       OPT_NO_D, OPT_APPEND, OPT_NO_ICONV, OPT_INFO, OPT_DEBUG, OPT_BLOCK_SIZE,
-      OPT_USERMAP, OPT_GROUPMAP, OPT_CHOWN, OPT_BWLIMIT, OPT_STDERR,
+      OPT_USERMAP, OPT_GROUPMAP, OPT_CHOWN, OPT_BWLIMIT, OPT_STDERR, OPT_CLONE_DEST,
       OPT_OLD_COMPRESS, OPT_NEW_COMPRESS, OPT_NO_COMPRESS, OPT_OLD_ARGS,
       OPT_STOP_AFTER, OPT_STOP_AT,
       OPT_REFUSED_BASE = 9000};
@@ -752,6 +752,7 @@
   {"compare-dest",     0,  POPT_ARG_STRING, 0, OPT_COMPARE_DEST, 0, 0 },
   {"copy-dest",        0,  POPT_ARG_STRING, 0, OPT_COPY_DEST, 0, 0 },
   {"link-dest",        0,  POPT_ARG_STRING, 0, OPT_LINK_DEST, 0, 0 },
+  {"clone-dest",       0,  POPT_ARG_STRING, 0, OPT_CLONE_DEST, 0, 0 },
   {"fuzzy",           'y', POPT_ARG_NONE,   0, 'y', 0, 0 },
   {"no-fuzzy",         0,  POPT_ARG_VAL,    &fuzzy_basis, 0, 0, 0 },
   {"no-y",             0,  POPT_ARG_VAL,    &fuzzy_basis, 0, 0, 0 },
@@ -1013,6 +1014,9 @@
 #ifndef SUPPORT_HARD_LINKS
 	parse_one_refuse_match(0, "link-dest", list_end);
 #endif
+#ifndef FICLONE
+	parse_one_refuse_match(0, "clone-dest", list_end);
+#endif
 #ifndef HAVE_MKTIME
 	parse_one_refuse_match(0, "stop-at", list_end);
 #endif
@@ -1342,6 +1346,8 @@
 		return "--copy-dest";
 	case LINK_DEST:
 		return "--link-dest";
+	case CLONE_DEST:
+		return "--clone-dest";
 	default:
 		NOISY_DEATH("Unknown alt_dest_opt type");
 	}
@@ -1727,6 +1733,10 @@
 			want_dest_type = LINK_DEST;
 			goto set_dest_dir;
 
+		case OPT_CLONE_DEST:
+			want_dest_type = CLONE_DEST;
+			goto set_dest_dir;
+
 		case OPT_COPY_DEST:
 			want_dest_type = COPY_DEST;
 			goto set_dest_dir;
Common subdirectories: rsync-3.4.1+ds1/packaging and ../trixie4/rsync-3.4.1+ds1/packaging
Common subdirectories: rsync-3.4.1+ds1/.pc and ../trixie4/rsync-3.4.1+ds1/.pc
diff -U3 rsync-3.4.1+ds1/rsync.1.md ../trixie4/rsync-3.4.1+ds1/rsync.1.md
--- rsync-3.4.1+ds1/rsync.1.md	2024-11-20 00:45:50.000000000 -0500
+++ ../trixie4/rsync-3.4.1+ds1/rsync.1.md	2026-05-20 20:18:25.730823635 -0400
@@ -510,6 +510,7 @@
 --compare-dest=DIR       also compare destination files relative to DIR
 --copy-dest=DIR          ... and include copies of unchanged files
 --link-dest=DIR          hardlink to files in DIR when unchanged
+--clone-dest=DIR         clone (reflink) files from DIR when unchanged
 --compress, -z           compress file data during the transfer
 --compress-choice=STR    choose the compression algorithm (aka --zc)
 --compress-level=NUM     explicitly set compression level (aka --zl)
@@ -2720,6 +2721,18 @@
     this bug by avoiding the `-o` option (or using `--no-o`) when sending to an
     old rsync.
 
+0.  `--clone-dest=DIR`
+
+    This option behaves like [`--link-dest`](#opt), but unchanged files are
+    reflinked from _DIR_ to the destination directory.  The files do not need
+    to match in attributes, as the data is cloned separately from the
+    attributes.
+
+    If _DIR_ is a relative path, it is relative to the destination directory.
+    See also [`--compare-dest`](#opt) and [`--copy-dest`](#opt).
+
+    All non-regular files are hard-linked (when possible).
+
 0.  `--compress`, `-z`
 
     With this option, rsync compresses the file data as it is sent to the
diff -U3 rsync-3.4.1+ds1/rsync.h ../trixie4/rsync-3.4.1+ds1/rsync.h
--- rsync-3.4.1+ds1/rsync.h	2026-05-20 20:19:47.000000000 -0400
+++ ../trixie4/rsync-3.4.1+ds1/rsync.h	2026-05-20 20:18:25.734823257 -0400
@@ -193,6 +193,11 @@
 #define COMPARE_DEST 1
 #define COPY_DEST 2
 #define LINK_DEST 3
+#define CLONE_DEST 4
+
+#if !defined FICLONE && defined __linux__
+#define FICLONE _IOW(0x94, 9, int)
+#endif
 
 #define MPLEX_BASE 7
 
Common subdirectories: rsync-3.4.1+ds1/support and ../trixie4/rsync-3.4.1+ds1/support
diff -U3 rsync-3.4.1+ds1/syscall.c ../trixie4/rsync-3.4.1+ds1/syscall.c
--- rsync-3.4.1+ds1/syscall.c	2026-05-20 20:19:47.000000000 -0400
+++ ../trixie4/rsync-3.4.1+ds1/syscall.c	2026-05-20 20:18:25.734823257 -0400
@@ -399,6 +399,54 @@
 }
 #endif
 
+int do_clone(const char *old_path, const char *new_path, mode_t mode)
+{
+#ifdef FICLONE
+	int ifd, ofd, ret, save_errno;
+
+	if (dry_run) return 0;
+	RETURN_ERROR_IF_RO_OR_LO;
+
+	if ((ifd = do_open(old_path, O_RDONLY, 0)) < 0) {
+		save_errno = errno;
+		rsyserr(FERROR_XFER, errno, "open %s", full_fname(old_path));
+		errno = save_errno;
+		return -1;
+	}
+
+	if (robust_unlink(new_path) && errno != ENOENT) {
+		save_errno = errno;
+		rsyserr(FERROR_XFER, errno, "unlink %s", full_fname(new_path));
+		close(ifd);
+		errno = save_errno;
+		return -1;
+	}
+
+	mode &= INITACCESSPERMS;
+	if ((ofd = do_open(new_path, O_WRONLY | O_CREAT | O_TRUNC | O_EXCL, mode)) < 0) {
+		save_errno = errno;
+		rsyserr(FERROR_XFER, save_errno, "open %s", full_fname(new_path));
+		close(ifd);
+		errno = save_errno;
+		return -1;
+	}
+
+	ret = ioctl(ofd, FICLONE, ifd);
+	save_errno = errno;
+	close(ifd);
+	close(ofd);
+	if (ret < 0)
+		unlink(new_path);
+	errno = save_errno;
+	return ret;
+#else
+	(void)old_path;
+	(void)new_path;
+	errno = ENOTSUP;
+	return -1;
+#endif
+}
+
 int do_lchown(const char *path, uid_t owner, gid_t group)
 {
 	if (dry_run) return 0;
Common subdirectories: rsync-3.4.1+ds1/testhelp and ../trixie4/rsync-3.4.1+ds1/testhelp
Common subdirectories: rsync-3.4.1+ds1/testsuite and ../trixie4/rsync-3.4.1+ds1/testsuite
diff -U3 rsync-3.4.1+ds1/tls.c ../trixie4/rsync-3.4.1+ds1/tls.c
--- rsync-3.4.1+ds1/tls.c	2026-05-20 20:19:47.000000000 -0400
+++ ../trixie4/rsync-3.4.1+ds1/tls.c	2026-05-20 20:18:25.734823257 -0400
@@ -53,6 +53,8 @@
 int copy_links = 0;
 int copy_unsafe_links = 0;
 
+short info_levels[COUNT_INFO], debug_levels[COUNT_DEBUG];
+
 #ifdef SUPPORT_XATTRS
 
 #ifdef HAVE_LINUX_XATTRS
diff -U3 rsync-3.4.1+ds1/trimslash.c ../trixie4/rsync-3.4.1+ds1/trimslash.c
--- rsync-3.4.1+ds1/trimslash.c	2025-01-14 13:30:32.000000000 -0500
+++ ../trixie4/rsync-3.4.1+ds1/trimslash.c	2026-05-20 20:18:25.734823257 -0400
@@ -29,6 +29,8 @@
 int copy_links = 0;
 int copy_unsafe_links = 0;
 
+short info_levels[COUNT_INFO], debug_levels[COUNT_DEBUG];
+
 int
 main(int argc, char **argv)
 {
-- 
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