Dear Andrey, I know I have been too demanding, making a number of installation requests. Even though, my requests intend to help make a SageCell a full-fledged computing interface. While I and users of our forum benefit a lot, I'm sure, many more people from around the globe will benefit too. Shall that be possible, I request the following software:
1. TensorFlow (https://www.tensorflow.org/) and Keras (https://keras.io/) - for Machine/deep learning, AI, data science (we want to use it for teaching and prototyping) - pip install tensorflow - pip install keras 2. Astroquery: pip install --pre astroquery ( https://astroquery.readthedocs.io/en/latest/) (for astronomy/astrophysics) This has a number of dependencies: - numpy, astropy, requests, html5lib <https://pypi.python.org/pypi/html5lib>, six -- they are already installed according to my tests - beautifulsoup (pip install beautifulsoup4 -- https://pypi.org/project/beautifulsoup4/), in itself, is very needed and great for web scraping -- data science - pyVO <https://pyvo.readthedocs.io/en/latest/>, keyring <https://pypi.python.org/pypi/keyring> ( pip install pyvo, pip install keyring) - See more requirements: https://astroquery.readthedocs.io/en/latest/ 3. GetDist: pip install getdist ( https://getdist.readthedocs.io/en/latest/intro.html) -- for MCMC sample analysis, plotting and GUI 4. Nbodykit: https://nbodykit.readthedocs.io/en/latest/getting-started/install.html#installing-nbodykit-with-pip (for cosmology/astrophysics) 5. Dash: pip install dash (https://pypi.org/project/dash/, see here https://www.datacamp.com/community/tutorials/learn-build-dash-python too) -- for machine learning/data science apps 6. Scrapy: pip install Scrapy ( https://docs.scrapy.org/en/latest/intro/install.html) -- https://scrapy.org/, a web-spider/web scraper framework for data science. 7. Itikz: pip install itikz (https://pypi.org/project/itikz/#description) - Cell magic for PGF/TikZ-to-SVG rendering in Jupyter - hope it will work with SageCell (useful for teaching TikZ/PGF LaTeX) 8. Tikzplotlib: pip install tikzplotlib ( https://pypi.org/project/tikzplotlib/) -- a Python tool for converting matplotlib figures into PGFPlots <https://www.ctan.org/pkg/pgfplots> ( PGF/TikZ <https://www.ctan.org/pkg/pgf>), into a code that can be inserted directly in LaTeX. Kind regards, Elimboto On Fri, Dec 25, 2020 at 7:56 AM Elimboto Yohana <[email protected]> wrote: > Thank you very much Andrey, appreciating. > > Kind regards, > Elimboto > > On Friday, December 25, 2020, Andrey Novoseltsev <[email protected]> > wrote: > > selenium and chart-studio are installed! > > > > On Wed, Dec 23, 2020 at 6:47 AM Elimboto Yohana <[email protected]> wrote: > >> > >> Bokeh dependence: > >> However, exporting images with bokeh to formats like png, or others, > requires selenium ( > https://docs.bokeh.org/en/latest/docs/user_guide/export.html): > >> pip install selenium > >> Kind regards, > >> Elimboto > >> > >> On Wed, Dec 23, 2020 at 12:39 PM Elimboto Yohana <[email protected]> wrote: > >>> > >>> Hi Andrey, > >>> > >>> Looks like you have installed all the modules I requested, thank you > so much. I have a request for one "Plotly" dependence -- chart-studio, > which can be installed as > >>> > >>> pip install chart_studio > >>> The previously used module plotly.plotly is deprecated. > >>> Kind regards, > >>> Elimboto > >>> > >>> > >>> > >>> > >>> On Sun, Dec 20, 2020 at 7:10 PM Andrey Novoseltsev <[email protected]> > wrote: > >>>> > >>>> All will be available soon! > >>>> > >>>> On Wed, Dec 16, 2020 at 4:12 AM Elimboto Yohana <[email protected]> wrote: > >>>>> > >>>>> Hi Andrey, > >>>>> I would suggest the installation of the following libraries/software > should it be possible (most of these tools are great for animations and > visualizations): > >>>>> 1. Plotly: pip install plotly (https://pypi.org/project/plotly/) or > specify version: pip install plotly==4.14.1 > >>>>> 2. SciTools: pip install scitools3 ( > https://pypi.org/project/scitools3/, see also > https://code.google.com/archive/p/scitools/wikis/Installation.wiki) > >>>>> 3. Python wrapper for Gnuplot (http://www.gnuplot.info/), > PyGnuplot: pip install PyGnuplot (https://pypi.org/project/PyGnuplot/). > Gnuplot can be installed as stand-alone. You could also install Gnuplot.py: > http://gnuplot-py.sourceforge.net/ ( see demo usage here: > https://www.tssfl.com/gnuplot-py-usage-4670) > >>>>> 4. Mathematical Animation Engine, Manim: pip3 install manimlib ( > https://github.com/3b1b/manim, see also the community version > https://github.com/ManimCommunity/manim/) > >>>>> > >>>>> 5. Bokeh: pip install bokeh (https://pypi.org/project/bokeh/) > >>>>> 6. Gif: pip install -U gif (https://pypi.org/project/gif/) > >>>>> In addition you can install OpenCv: > https://pypi.org/project/opencv-python/ > >>>>> Kind regards, > >>>>> Elimboto > >>>>> > >>>>> On Tue, Dec 15, 2020 at 7:15 PM Elimboto Yohana <[email protected]> > wrote: > >>>>>> > >>>>>> Hi Andrey, > >>>>>> How do I read the following files on Github in Sage Cell? > >>>>>> 1. https://github.com/TSSFL/cosmo_datasets/tree/master/hdf5_data.h5 > >>>>>> 2. > https://github.com/TSSFL/cosmo_datasets/blob/main/avgmap_nside512_f1250.00MHz.fits > >>>>>> They respectively require h5py and healpy packages to read them, so > locally I would import the libraries and read them as follows: > >>>>>> import h5py > >>>>>> f1 = h5py.File('..../hdf5_data.h5', 'r') #... stands for path to > the file > >>>>>> import healpy as hp > >>>>>> > >>>>>> f2 = hp.fitsfunc.read_map('..../avgmap_nside512_f1250.00MHz.fits', > field=0) > >>>>>> I tried > >>>>>> > >>>>>> f1 = h5py.File(' > https://github.com/TSSFL/cosmo_datasets/tree/master/hdf5_data.h5', 'r') > >>>>>> f2 = maps = hp.fitsfunc.read_map(' > https://github.com/TSSFL/cosmo_datasets/blob/main/avgmap_nside512_f1250.00MHz.fits', > field=0) > >>>>>> on Sage Cell but failed, I get some errors. > >>>>>> Kind regards, > >>>>>> Elimboto > >>>>>> > >>>>>> On Tue, Dec 15, 2020 at 4:21 AM Elimboto Yohana <[email protected]> > wrote: > >>>>>>> > >>>>>>> Pandas works great, but so far I have tested pandas with .csv data > files. I will test reading other data files such as .fits, .h5 and so on. > >>>>>>> > >>>>>>> Thank you, > >>>>>>> > >>>>>>> Elimboto > >>>>>>> > >>>>>>> On Tuesday, December 15, 2020, Andrey Novoseltsev < > [email protected]> wrote: > >>>>>>> > You have internet access from SageCell, so you definitely can > read data from GitHub - as far as for interpreting and parsing them it > depends on what you want and need to process them. I think panda is > installed, so your code should work - does it not? If something else needs > to be installed - let me know! > >>>>>>> > On Mon, Dec 14, 2020 at 12:05 PM Elimboto Yohana <[email protected]> > wrote: > >>>>>>> >> > >>>>>>> >> Thank you, Andrey, > >>>>>>> >> I will let you know If I encounter any issues. There are some > warnings, but they don't cause any harm so far. I also hope the available > dependencies suffice for current use. > >>>>>>> >> > >>>>>>> >> I do not know why my messages do not appear in the Google > group, I have actually been replying to both your email and the google > group! > >>>>>>> >> One thing I would like to ask, If I have some astronomical data > on a public repository such as GitHub, say the data is in .fits, or .h5 > (HDF5) formats, can the data in these file formats be read by parsing the > repo URL? Or how can this be done? Is there a limitation for some data > formats? > >>>>>>> >> > >>>>>>> >> For example, using pandas we can read .csv data file on GitHub > as > >>>>>>> >> df = pd.read_csv(" > https://github.com/selva86/datasets/raw/master/mtcars.csv";) > >>>>>>> >> Kind regards, > >>>>>>> >> Elimboto > >>>>>>> >> > >>>>>>> >> > >>>>>>> >> On Mon, Dec 14, 2020 at 7:37 PM Andrey Novoseltsev < > [email protected]> wrote: > >>>>>>> >>> > >>>>>>> >>> Hi Elimboto! > >>>>>>> >>> If there are cases when they don't work because of some > missing optional dependencies, I'll be happy to install those as well! > >>>>>>> >>> I am also a bit puzzled why your messages do not show up in > the google group - as far as I can tell you are allowed to post and there > are no messages in moderation. > >>>>>>> >>> Best, > >>>>>>> >>> Andrey > >>>>>>> >>> > >>>>>>> >>> -- > >>>>>>> >>> You received this message because you are subscribed to the > Google Groups "sage-cell" group. > >>>>>>> >>> To unsubscribe from this group and stop receiving emails from > it, send an email to [email protected]. > >>>>>>> >>> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-cell/CAD0_dC5qDkhMuMmZj5E%3DvsHiTvnnqvq2Nw637GH8BeMWtrW_%2Bw%40mail.gmail.com > . > >>>>>>> > > >>>>>>> > -- > >>>>>>> > You received this message because you are subscribed to the > Google Groups "sage-cell" group. > >>>>>>> > To unsubscribe from this group and stop receiving emails from > it, send an email to [email protected]. > >>>>>>> > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-cell/CAD0_dC65mDrsVEyZUEf%2BNyB7q%2BUTKor0oiC9TAHbnfTGvadftg%40mail.gmail.com > . > >>>>>>> > > >>>> > >>>> -- > >>>> You received this message because you are subscribed to the Google > Groups "sage-cell" group. > >>>> To unsubscribe from this group and stop receiving emails from it, > send an email to [email protected]. > >>>> To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-cell/CAD0_dC5EcDLDCTbZK6Vq4HP8Lqqr-GOD7JyQBQNOm%2Bj-bfJwJw%40mail.gmail.com > . > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-cell" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-cell/CAD0_dC4Z%2BKvpJJFJKZ%2Bg5OuAO_gTQKwrzvXfvYUOJzM6MrDn8A%40mail.gmail.com > . > > -- You received this message because you are subscribed to the Google Groups "sage-cell" group. 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