Github issue created.  This is definitely a new bug:

  https://github.com/sagemathinc/smc/issues/1022

On Mon, Oct 10, 2016 at 9:39 PM, Dave Rosoff <[email protected]> wrote:
> Hello,
>
> I noticed this morning that when my students chat from files in their SMC
> projects (these are .c++ files), I see the notification as usual but the
> behavior has changed. Last week, clicking the notification would take me to
> the chat within the file, so that I could see their code alongside the chat.
> Today it takes me to the .sage-chat file, so I see the whole chat but have
> to visit the file manually.
>
> This wouldn't be a big deal except that the .sage-chat file seems to live in
> a .-version of their entire project. That is, if the student chats to me
> from ~/path/to/the/source.c++, the file the notification opens is
> ~/.path/to/the/.source.c++.sage-chat. So I have to do some navigation before
> I can get into the file. It is not the end of the world to have to do this,
> but it would be simpler to just see the file that "owns" the chat, since I
> invariably want to visit it before responding.
>
> Thanks for everything,
> Dave
>
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-- 

Best Regards,
William Stein

CEO, SageMath, Inc.

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