Hi Michael, I put it afterwards, because of the warning message present in the output. As I said, I did not think there was any relevance, but if on top of it it is wrong then the warning should go! For reference I am putting the part of the log at the end of this email.
As for sage_fortran.bin, the -b does not work: [EMAIL PROTECTED] sage-2.9.1.1]$ local/bin/sage_fortran.bin -b sage_fortran.bin: '-b' option must have argument but -v gives : [EMAIL PROTECTED] sage-2.9.1.1]$ local/bin/sage_fortran.bin -v Using built-in specs. Target: Configured with: ../configure --enable-languages=c Thread model: posix gcc version 4.0.3 (g95 0.91!) Jul 17 2007 best, Johann --------------------------- running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands -- compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands -- fcompiler options running build_src building py_modules sources building extension "numpy.core.multiarray" sources Generating build/src.linux-i686-2.5/numpy/core/config.h error: don't know how to compile Fortran code on platform 'posix' with 'gfortran' compiler. Supported compilers are: intelem,absoft,compaq,ibm,sun,lahey,sage_fortran,pg,hpux,intele,gnu95,intelv,g95,compaqv,mips,vast,nag,none,intel,f,gnu,intelev) Error building numpy. Try setting SAGE_ATLAS to the directory that contains lib/libatlas.a ? real 0m0.911s user 0m0.620s sys 0m0.220s sage: An error occurred while installing numpy-20071020-1.0.3.1.p3 Please email sage-devel http://groups.google.com/group/sage-devel explaining the problem and send the relevant part of of /data1/sources/sage-2.9.1.1/install.log. Describe your computer, operating system, etc. If you want to try to fix the problem, yourself *don't* just cd to /data1/sources/sage-2.9.1.1/spkg/build/numpy-20071020-1.0.3.1.p3 and type 'make'. Instead type "/data1/sources/sage-2.9.1.1/sage -sh" in order to set all environment variables correctly, then cd to /data1/sources/sage-2.9.1.1/spkg/build/numpy-20071020-1.0.3.1.p3 (When you are done debugging, you can type "exit" to leave the subshell.) make[1]: *** [installed/numpy-20071020-1.0.3.1.p3] Error 1 make[1]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg' --------------------------------------------------------------- On Jan 3, 4:08 am, mabshoff <[EMAIL PROTECTED] dortmund.de> wrote: > Hello Johann, > > On Jan 3, 9:30 am, Johannct <[EMAIL PROTECTED]> wrote: > > > [EMAIL PROTECTED] sage-2.9.1.1]$ env > > SSH_AGENT_PID=3331 > > HOSTNAME=localhost.localdomain > > SAGE_ATLAS=/usr/local/atlas > > This is wrong/unneeded since we now build ATLAS. Did you set this > before or after the build of scipy failed? What fortran compiler does > $SAGE_ROOT/local/bin/sage_fortran point to, i.e. what does $SAGE_ROOT/ > local/bin/sage_fortran.bin -b tell you? > > Cheers, > > Michael > > > SHELL=/bin/bash > > TERM=xterm > > DESKTOP_STARTUP_ID= > > HISTSIZE=1000 > > XDG_SESSION_COOKIE=424f99052673e293581389004676f100-1199038684.707549-380548520 > > PERL5LIB=/usr/lib/perl5/site_perl/5.8.8/i386-linux-thread-multi:/usr/ > > lib/perl5/site_perl/5.8.8:/usr/lib/perl5/vendor_perl/5.8.8/i386-linux- > > thread-multi:/usr/lib/perl5/vendor_perl/5.8.8 > > HEADAS=/usr/local/heasoft/i686-pc-linux-gnu-libc2.6/ > > GTK_RC_FILES=/etc/gtk/gtkrc:/home/cohen/.gtkrc-1.2-gnome2 > > CVSROOT=:ext:[EMAIL PROTECTED]:/nfs/slac/g/glast/ > > ground/cvs > > WINDOWID=88122558 > > cxx=g++34 > > OLDPWD=/data1/sources/sage-2.9.1.1/spkg/build/ > > numpy-20071020-1.0.3.1.p3 > > CMTVERSION=v1r18p20061003 > > QTDIR=/usr/lib/qt-3.3 > > QTINC=/usr/lib/qt-3.3/include > > CMTROOT=/data1/GLAST/GLAST_EXT/CMT/v1r18p20061003 > > USER=cohen > > LD_LIBRARY_PATH=/usr/local/lib:/usr/local/lib/root:/opt/openmotif/usr/ > > lib:/usr/local/atlas/lib: > > LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;35:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35: > > CMTCONFIG=rhel4_gcc34 > > GNOME_KEYRING_SOCKET=/tmp/keyring-f9JzEu/socket > > SSH_AUTH_SOCK=/tmp/ssh-svlfkG3189/agent.3189 > > SESSION_MANAGER=local/unix:/tmp/.ICE-unix/3189 > > USERNAME=cohen > > MAIL=/var/spool/mail/cohen > > PATH=/usr/lib/qt-3.3/bin:/usr/kerberos/bin:/usr/lib/ccache:/usr/local/ > > bin:/usr/bin:/bin:/home/cohen/bin:/data1/GLAST/GLAST_EXT/CMT/ > > v1r18p20061003/Linux-i686 > > DESKTOP_SESSION=default > > GDM_XSERVER_LOCATION=local > > INPUTRC=/etc/inputrc > > PWD=/data1/sources/sage-2.9.1.1 > > GLAST_EXT=/data1/GLAST/GLAST_EXT > > LANG=en_US.UTF-8 > > KDE_IS_PRELINKED=1 > > KDEDIRS=/usr > > GDMSESSION=default > > CMTBIN=Linux-i686 > > SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass > > SHLVL=2 > > HOME=/home/cohen > > CMTEXTRATAGS=cxx_env > > GNOME_DESKTOP_SESSION_ID=Default > > IDL_PATH=/data1/sources/gdl/src/pro:/data1/sources/IDL_GBM/astrolib/ > > pro:/data1/sources/IDL_GBM/idllib/obsolete:/data1/sources/IDL_GBM/ > > idllib:/data1/sources/IDL_GBM/cmsvlib: > > PYTHONPATH=/usr/local/lib/root > > LOGNAME=cohen > > QTLIB=/usr/lib/qt-3.3/lib > > CVS_RSH=ssh > > CLASSPATH=:/data1/GLAST/GLAST_EXT/CMT/v1r18p20061003/java/cmt.jar > > DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus- > > wYfwrp60F3,guid=d6a26cbbaacc23dc859fc8004777e0dd > > LESSOPEN=|/usr/bin/lesspipe.sh %s > > DISPLAY=:0.0 > > G_BROKEN_FILENAMES=1 > > COLORTERM=gnome-terminal > > XAUTHORITY=/tmp/.gdmRQKE4T > > _=/usr/bin/env > > > hth, > > Johann > > > On Jan 2, 11:00 pm, mabshoff <[EMAIL PROTECTED] > > > dortmund.de> wrote: > > > On Jan 3, 6:16 am, Joshua Kantor <[EMAIL PROTECTED]> wrote: > > > > > Hmm. That is very weird that it saw your system as posix and not > > > > linux. > > > > Out of curiosity what does uname -a output on your system. > > > > It looks like a current Fedora Core 7: > > > > UNAME : Linux localhost.localdomain 2.6.23.1-21.fc7 #1 SMP Thu > > > Nov 1 21:09:24 EDT 2007 i686 i686 i386 GNU/Linux > > > > Could you post the complete output from env? > > > > Cheers, > > > > Michael --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-devel@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://sage.scipy.org/sage/ and http://modular.math.washington.edu/sage/ -~----------~----~----~----~------~----~------~--~---
