fresh rebuild from a vanilla source, LD_LIBRARY_PATH, PYTHONPATH
etc... unsetenved, and using make and *not* make -j2 and using
SAGE_FORTRAN set to gfortran, I still stumble :
make[3]: `libcblas.so' is up to date.
make[3]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build/lib'
make[2]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build/lib'
make[2]: Entering directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build'
mkdir -p /data1/sources/sage-2.9.1.1/local/include/atlas
chmod 0755 /data1/sources/sage-2.9.1.1/local/include/atlas
make -f Make.top install_inc INSTdir=/data1/sources/sage-2.9.1.1/local/
include
make[3]: Entering directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build'
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/../
src/ATLAS//include/cblas.h /data1/sources/sage-2.9.1.1/local/include/.
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/../
src/ATLAS//include/clapack.h /data1/sources/sage-2.9.1.1/local/
include/.
chmod 0644 /data1/sources/sage-2.9.1.1/local/include/cblas.h /data1/
sources/sage-2.9.1.1/local/include/clapack.h
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/
include/* /data1/sources/sage-2.9.1.1/local/include/atlas/.
chmod 0644 /data1/sources/sage-2.9.1.1/local/include/atlas/*
make[3]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build'
make -f Make.top install_lib INSTdir=/data1/sources/sage-2.9.1.1/local/
lib
make[3]: Entering directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build'
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libatlas.a /data1/sources/sage-2.9.1.1/local/lib/.
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libcblas.a /data1/sources/sage-2.9.1.1/local/lib/.
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
liblapack.a /data1/sources/sage-2.9.1.1/local/lib/.
chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libatlas.a /data1/
sources/sage-2.9.1.1/local/lib/liblapack.a \
/data1/sources/sage-2.9.1.1/local/lib/libcblas.a
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libf77blas.a /data1/sources/sage-2.9.1.1/local/lib/.
chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libf77blas.a
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libptcblas.a /data1/sources/sage-2.9.1.1/local/lib/.
cp: cannot stat `/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/
ATLAS-build/lib/libptcblas.a': No such file or directory
make[3]: [install_lib] Error 1 (ignored)
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libptf77blas.a /data1/sources/sage-2.9.1.1/local/lib/.
cp: cannot stat `/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/
ATLAS-build/lib/libptf77blas.a': No such file or directory
make[3]: [install_lib] Error 1 (ignored)
chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libptcblas.a /data1/
sources/sage-2.9.1.1/local/lib/libptf77blas.a
chmod: cannot access `/data1/sources/sage-2.9.1.1/local/lib/
libptcblas.a': No such file or directory
chmod: cannot access `/data1/sources/sage-2.9.1.1/local/lib/
libptf77blas.a': No such file or directory
make[3]: [install_lib] Error 1 (ignored)
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libatlas.so /data1/sources/sage-2.9.1.1/local/lib/.
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libcblas.so /data1/sources/sage-2.9.1.1/local/lib/.
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
libf77blas.so /data1/sources/sage-2.9.1.1/local/lib/.
cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
liblapack.so /data1/sources/sage-2.9.1.1/local/lib/.
chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libatlas.so /data1/
sources/sage-2.9.1.1/local/lib/liblapack.so \
/data1/sources/sage-2.9.1.1/local/lib/
libcblas.so /data1/sources/sage-2.9.1.1/local/lib/libcblas.so
make[3]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build'
make[2]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg/build/
atlas-3.8.p6/ATLAS-build'
ld -L/data1/sources/sage-2.9.1.1/local/lib -shared -soname
liblapack.so -o liblapack.so --whole-archive liblapack.a --no-whole-
archive -lc -lm -lgfortran
ld: cannot find -lgfortran
ld -L/data1/sources/sage-2.9.1.1/local/lib -shared -soname
libf77blas.so -o libf77blas.so --whole-archive libf77blas.a --no-whole-
archive -lc -lm -lgfortran
ld: cannot find -lgfortran
real 10m29.755s
user 9m17.776s
sys 0m50.167s
sage: An error occurred while installing atlas-3.8.p6
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /data1/sources/sage-2.9.1.1/install.log. Describe your computer,
operating system, etc.
If you want to try to fix the problem, yourself *don't* just cd to
/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6 and type 'make'.
Instead type "/data1/sources/sage-2.9.1.1/sage -sh"
in order to set all environment variables correctly, then cd to
/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6
(When you are done debugging, you can type "exit" to leave the
subshell.)
make[1]: *** [installed/atlas-3.8.p6] Error 1
make[1]: Leaving directory `/data1/sources/sage-2.9.1.1/spkg'
real 22m21.025s
user 17m26.185s
sys 3m11.789s
So now it does not seem to find gfortran library:
[EMAIL PROTECTED] sage-2.9.1.1]$ locate libgfortran
/usr/lib/libgfortran.so.1
/usr/lib/libgfortran.so.1.0.0
/usr/lib/gcc/i386-redhat-linux/4.1.2/libgfortran.a
/usr/lib/gcc/i386-redhat-linux/4.1.2/libgfortran.so
/usr/lib/gcc/i386-redhat-linux/4.1.2/libgfortranbegin.a
/usr/share/doc/gcc-gfortran-4.1.2/ChangeLog.libgfortran.bz2
I assume that this is the real problem, and that the missing threaded
ATLAS libraries are actually not a problem....
On Jan 4, 11:22 am, Johannct <[EMAIL PROTECTED]> wrote:
> I rebuilt in place, and I just realized that I might have issued the
> command make -j2 the first time, as I have a dual core machine. So I
> am just remaking with this command just to see..... If that fails I
> will start from a fresh source again.....
>
> On Jan 4, 11:18 am, mabshoff <[EMAIL PROTECTED]
>
> dortmund.de> wrote:
> > On Jan 4, 8:10 pm, Johannct <[EMAIL PROTECTED]> wrote:
>
> > > ok, now it fails before numpy seemingly : it did not build all the
> > > atlas librairies and bail out after complainng that it cannot cp
> > > them... I relaunched a make, and it seems to build all the libs again,
> > > which is strange...
> > > Anyway :
> > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
> > > libptcblas.a /data1/sources/sage-2.9.1.1/local/lib/.
> > > cp: cannot stat `/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/
> > > ATLAS-build/lib/libptcblas.a': No such file or directory
> > > make[3]: [install_lib] Error 1 (ignored)
> > > cp /data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/ATLAS-build/lib/
> > > libptf77blas.a /data1/sources/sage-2.9.1.1/local/lib/.
> > > cp: cannot stat `/data1/sources/sage-2.9.1.1/spkg/build/atlas-3.8.p6/
> > > ATLAS-build/lib/libptf77blas.a': No such file or directory
> > > make[3]: [install_lib] Error 1 (ignored)
> > > chmod 0644 /data1/sources/sage-2.9.1.1/local/lib/libptcblas.a /data1/
> > > sources/sage-2.9.1.1/local/lib/libptf77blas.a
> > > chmod: cannot access `/data1/sources/sage-2.9.1.1/local/lib/
> > > libptcblas.a': No such file or directory
> > > chmod: cannot access `/data1/sources/sage-2.9.1.1/local/lib/
> > > libptf77blas.a': No such file or directory
>
> > > and indeed:
> > > [EMAIL PROTECTED] sage-2.9.1.1]$ ls /data1/sources/sage-2.9.1.1/spkg/
> > > build/atlas-3.8.p6/ATLAS-build/lib/
> > > libatlas.a libatlas.so libcblas.a libcblas.so libclapack.a
> > > libf77blas.a libf77blas.so liblapack.a liblapack.so libtstatlas.a
> > > Makefile Make.inc
>
> > That is to be expected. the libraries it complains about are the multi
> > threaded versions of ATLAS which we do not build. If they do not exist
> > the makefile from ATLAS just ignores those errors. Look in the spkg-
> > install in spkg/build/atlas-3.8.p6/ to see what we do.
>
> > One more question: did you start with a fresh build from vanilla
> > sources or did you rebuild in place?
>
> > Cheers,
>
> > Michael
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