2009/7/13 Peter <[email protected]>: > > Greetings. I have just downloaded and attempted to build from source > sage-4.1 and got the following error message: Error building > ratpoints. Please advise on how to fix the problem. Relevant system > information and portion of install.log are included below.
> gcc version 3.4.6 20060404 (Red Hat 3.4.6-8) You are using GCC-3.4.6, which is really really old. Please try again with GCC version >= 4. GCC 4.0 was released in April 2005. > Also, one other question: I would like to have an up-to-date Python > installed including numpy, scipy, and other useful packages for > scientific programming. Can I simply use the Python that comes > bundled with Sage? Yes. > How does one do this, if it is possible (and > recommended). That's what I do. > Same question also for the Fortran compiler bundled with Sage. The answer for the fortran that comes with Sage is "no". It is out of date and designed merely to be small and be enough to build LAPACK and scipy. That's pretty much it. It's just a collection of several g95 binaries. > > > Contents of relevant portion of install.log: > ---------------------------------------------------------- > Successfully installed ecm-6.2.1.p0 > Now cleaning up tmp files. > Making Sage/Python scripts relocatable... > Making script relocatable > Finished installing ecm-6.2.1.p0.spkg > sage-spkg ratpoints-2.1.2.p2 2>&1 > You must set the SAGE_ROOT environment variable or > run this script from the SAGE_ROOT or > SAGE_ROOT/local/bin/ directory. > ratpoints-2.1.2.p2 > Machine: > Linux karl.ssd.loral.com 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT > 2007 x86_64 x86_64 x86_64 GNU/Linux > Deleting directories from past builds of previous/current versions of > ratpoints-2.1.2.p2 > Extracting package /projects/antenna_eng/tools/sage-4.1/spkg/standard/ > ratpoints-2.1.2.p2.spkg ... > -rw-r--r-- 1 simonp antenna 206557 Jul 9 15:06 /projects/antenna_eng/ > tools/sage-4.1/spkg/standard/ratpoints-2.1.2.p2.spkg > ratpoints-2.1.2.p2/ > ratpoints-2.1.2.p2/.hg/ > ratpoints-2.1.2.p2/.hg/00changelog.i > ratpoints-2.1.2.p2/.hg/dirstate > ratpoints-2.1.2.p2/.hg/requires > ratpoints-2.1.2.p2/.hg/store/ > ratpoints-2.1.2.p2/.hg/store/00changelog.i > ratpoints-2.1.2.p2/.hg/store/00manifest.i > ratpoints-2.1.2.p2/.hg/store/data/ > ratpoints-2.1.2.p2/.hg/store/data/.hgignore.i > ratpoints-2.1.2.p2/.hg/store/data/_s_p_k_g.txt.i > ratpoints-2.1.2.p2/.hg/store/data/spkg-install.i > ratpoints-2.1.2.p2/.hg/store/data/src/ > ratpoints-2.1.2.p2/.hg/store/data/src/_makefile.i > ratpoints-2.1.2.p2/.hg/store/fncache > ratpoints-2.1.2.p2/.hg/store/undo > ratpoints-2.1.2.p2/.hg/undo.branch > ratpoints-2.1.2.p2/.hg/undo.dirstate > ratpoints-2.1.2.p2/.hgignore > ratpoints-2.1.2.p2/spkg-install > ratpoints-2.1.2.p2/SPKG.txt > ratpoints-2.1.2.p2/src/ > ratpoints-2.1.2.p2/src/find_points.c > ratpoints-2.1.2.p2/src/gen_find_points_h.c > ratpoints-2.1.2.p2/src/gen_init_sieve_h.c > ratpoints-2.1.2.p2/src/gpl-2.0.txt > ratpoints-2.1.2.p2/src/init.c > ratpoints-2.1.2.p2/src/main.c > ratpoints-2.1.2.p2/src/Makefile > ratpoints-2.1.2.p2/src/primes.h > ratpoints-2.1.2.p2/src/ratpoints-doc.pdf > ratpoints-2.1.2.p2/src/ratpoints.h > ratpoints-2.1.2.p2/src/rp-private.h > ratpoints-2.1.2.p2/src/rptest.c > ratpoints-2.1.2.p2/src/sift.c > ratpoints-2.1.2.p2/src/sturm.c > ratpoints-2.1.2.p2/src/testbase > ratpoints-2.1.2.p2/src/testdata.h > Finished extraction > **************************************************** > Host system > uname -a: > Linux karl.ssd.loral.com 2.6.9-55.ELsmp #1 SMP Fri Apr 20 16:36:54 EDT > 2007 x86_64 x86_64 x86_64 GNU/Linux > **************************************************** > **************************************************** > GCC Version > gcc -v > Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.6/specs > Configured with: ../configure --prefix=/usr --mandir=/usr/share/man -- > infodir=/usr/share/info --enable-shared --enable-threads=posix -- > disable-checking --with-system-zlib --enable-__cxa_atexit --disable- > libunwind-exceptions --enable-java-awt=gtk --host=x86_64-redhat-linux > Thread model: posix > gcc version 3.4.6 20060404 (Red Hat 3.4.6-8) > **************************************************** > make[2]: Entering directory `/projects/antenna_eng/tools/sage-4.1/spkg/ > build/ratpoints-2.1.2.p2/src' > gcc sift.c -c -o sift.o -I/projects/antenna_eng/tools/sage-4.1/local/ > include -Wall -O2 -fPIC -DRATPOINTS_MAX_BITS_IN_PRIME=7 -DUSE_SSE - > funroll-loops > sift.c: In function `_ratpoints_sift0': > sift.c:229: warning: implicit declaration of function > `__builtin_ia32_vec_ext_v2di' > gcc gen_init_sieve_h.c -o gen_init_sieve_h -I/projects/antenna_eng/ > tools/sage-4.1/local/include -Wall -O2 -fPIC - > DRATPOINTS_MAX_BITS_IN_PRIME=7 -DUSE_SSE -L/projects/antenna_eng/tools/ > sage-4.1/local/lib -lgmp -lm > ./gen_init_sieve_h > init_sieve.h > gcc init.c -c -o init.o -I/projects/antenna_eng/tools/sage-4.1/local/ > include -Wall -O2 -fPIC -DRATPOINTS_MAX_BITS_IN_PRIME=7 -DUSE_SSE - > funroll-loops -O3 > gcc sturm.c -c -o sturm.o -I/projects/antenna_eng/tools/sage-4.1/local/ > include -Wall -O2 -fPIC -DRATPOINTS_MAX_BITS_IN_PRIME=7 -DUSE_SSE > gcc gen_find_points_h.c -o gen_find_points_h -I/projects/antenna_eng/ > tools/sage-4.1/local/include -Wall -O2 -fPIC - > DRATPOINTS_MAX_BITS_IN_PRIME=7 -DUSE_SSE -L/projects/antenna_eng/tools/ > sage-4.1/local/lib -lgmp -lm > ./gen_find_points_h > find_points.h > gcc find_points.c -c -o find_points.o -I/projects/antenna_eng/tools/ > sage-4.1/local/include -Wall -O2 -fPIC -DRATPOINTS_MAX_BITS_IN_PRIME=7 > -DUSE_SSE > find_points.c: In function `find_points_work': > find_points.c:1701: warning: implicit declaration of function > `__builtin_ia32_vec_ext_v2di' > ar rs libratpoints.a sift.o init.o sturm.o find_points.o > ar: creating libratpoints.a > gcc main.c -o ratpoints -I/projects/antenna_eng/tools/sage-4.1/local/ > include -Wall -O2 -fPIC -DRATPOINTS_MAX_BITS_IN_PRIME=7 -DUSE_SSE -L/ > projects/antenna_eng/tools/sage-4.1/local/lib -lgmp -lm -L. - > lratpoints > ./libratpoints.a(find_points.o)(.text+0x2ac8): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x2e24): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x3205): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x33d7): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x3728): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(sift.o)(.text+0x633): more undefined references to > `__builtin_ia32_vec_ext_v2di' follow > collect2: ld returned 1 exit status > make[2]: *** [ratpoints] Error 1 > make[2]: Leaving directory `/projects/antenna_eng/tools/sage-4.1/spkg/ > build/ratpoints-2.1.2.p2/src' > Build failed. Trying without SSE2 instructions. > make[2]: Entering directory `/projects/antenna_eng/tools/sage-4.1/spkg/ > build/ratpoints-2.1.2.p2/src' > gcc main.c -o ratpoints -I/projects/antenna_eng/tools/sage-4.1/local/ > include -Wall -O2 -fPIC -DRATPOINTS_MAX_BITS_IN_PRIME=7 -L/projects/ > antenna_eng/tools/sage-4.1/local/lib -lgmp -lm -L. -lratpoints > ./libratpoints.a(find_points.o)(.text+0x2ac8): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x2e24): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x3205): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x33d7): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(find_points.o)(.text+0x3728): In function > `find_points_work': > : undefined reference to `__builtin_ia32_vec_ext_v2di' > ./libratpoints.a(sift.o)(.text+0x633): more undefined references to > `__builtin_ia32_vec_ext_v2di' follow > collect2: ld returned 1 exit status > make[2]: *** [ratpoints] Error 1 > make[2]: Leaving directory `/projects/antenna_eng/tools/sage-4.1/spkg/ > build/ratpoints-2.1.2.p2/src' > Error building ratpoints > > real 0m1.850s > user 0m1.536s > sys 0m0.172s > sage: An error occurred while installing ratpoints-2.1.2.p2 > Please email sage-devel http://groups.google.com/group/sage-devel > explaining the problem and send the relevant part of > of /projects/antenna_eng/tools/sage-4.1/install.log. Describe your > computer, operating system, etc. > If you want to try to fix the problem, yourself *don't* just cd to > /projects/antenna_eng/tools/sage-4.1/spkg/build/ratpoints-2.1.2.p2 and > type 'make'. > Instead type "/projects/antenna_eng/tools/sage-4.1/sage -sh" > in order to set all environment variables correctly, then cd to > /projects/antenna_eng/tools/sage-4.1/spkg/build/ratpoints-2.1.2.p2 > (When you are done debugging, you can type "exit" to leave the > subshell.) > make[1]: *** [installed/ratpoints-2.1.2.p2] Error 1 > make[1]: Leaving directory `/projects/antenna_eng/tools/sage-4.1/spkg' > > real 83m42.516s > user 47m44.411s > sys 10m1.541s > Error building Sage. > > > Contents of /etc/redhat-release: > ----------------------------------------------- > Red Hat Enterprise Linux AS release 4 (Nahant Update 5) > > Contents of /proc/cpuinfo: > --------------------------------------- > processor : 0 > vendor_id : GenuineIntel > cpu family : 6 > model : 15 > model name : Intel(R) Xeon(R) CPU 5160 @ 3.00GHz > stepping : 6 > cpu MHz : 3000.003 > cache size : 4096 KB > physical id : 0 > siblings : 2 > core id : 0 > cpu cores : 2 > fpu : yes > fpu_exception : yes > cpuid level : 10 > wp : yes > flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca > cmov > pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall lm pni > monitor ds_cpl est tm2 cx16 xtpr > bogomips : 6004.09 > clflush size : 64 > cache_alignment : 64 > address sizes : 36 bits physical, 48 bits virtual > power management: > > processor : 1 > vendor_id : GenuineIntel > cpu family : 6 > model : 15 > model name : Intel(R) Xeon(R) CPU 5160 @ 3.00GHz > stepping : 6 > cpu MHz : 3000.003 > cache size : 4096 KB > physical id : 3 > siblings : 2 > core id : 6 > cpu cores : 2 > fpu : yes > fpu_exception : yes > cpuid level : 10 > wp : yes > flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca > cmov > pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall lm pni > monitor ds_cpl est tm2 cx16 xtpr > bogomips : 6000.03 > clflush size : 64 > cache_alignment : 64 > address sizes : 36 bits physical, 48 bits virtual > power management: > > processor : 2 > vendor_id : GenuineIntel > cpu family : 6 > model : 15 > model name : Intel(R) Xeon(R) CPU 5160 @ 3.00GHz > stepping : 6 > cpu MHz : 3000.003 > cache size : 4096 KB > physical id : 0 > siblings : 2 > core id : 1 > cpu cores : 2 > fpu : yes > fpu_exception : yes > cpuid level : 10 > wp : yes > flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca > cmov > pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall lm pni > monitor ds_cpl est tm2 cx16 xtpr > bogomips : 5999.99 > clflush size : 64 > cache_alignment : 64 > address sizes : 36 bits physical, 48 bits virtual > power management: > > processor : 3 > vendor_id : GenuineIntel > cpu family : 6 > model : 15 > model name : Intel(R) Xeon(R) CPU 5160 @ 3.00GHz > stepping : 6 > cpu MHz : 3000.003 > cache size : 4096 KB > physical id : 3 > siblings : 2 > core id : 7 > cpu cores : 2 > fpu : yes > fpu_exception : yes > cpuid level : 10 > wp : yes > flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca > cmov > pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm syscall lm pni > monitor ds_cpl est tm2 cx16 xtpr > bogomips : 6000.03 > clflush size : 64 > cache_alignment : 64 > address sizes : 36 bits physical, 48 bits virtual > power management: > > > > > -- William Stein Associate Professor of Mathematics University of Washington http://wstein.org --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to [email protected] To unsubscribe from this group, send email to [email protected] For more options, visit this group at http://groups.google.com/group/sage-devel URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
