2010/5/12 Jan Groenewald <[email protected]>:
> Hi

  Hi,

> On Tue, May 11, 2010 at 05:42:52PM -0300, Paulo C?sar Pereira de Andrade 
> wrote:
>> > java version "1.6.0_18"
>> > OpenJDK Runtime Environment (IcedTea6 1.8) (6b18-1.8-0ubuntu1)
>> > OpenJDK Client VM (build 14.0-b16, mixed mode, sharing)
>> > java.io.FileNotFoundException: /home/jan/.icedteaplugin/java.stderr (No 
>> > such file or directory)
>> >        at java.io.FileOutputStream.open(Native Method)
>> >        at java.io.FileOutputStream.<init>(FileOutputStream.java:209)
>> >        at java.io.FileOutputStream.<init>(FileOutputStream.java:160)
>> >        at sun.applet.PluginMain.<init>(PluginMain.java:130)
>> >        at sun.applet.PluginMain.main(PluginMain.java:116)
>> > 2010-05-11 09:42:12+0200 [HTTPChannel,6,127.0.0.1] Request error: 
>> > Connection to the other side was lost in a non-clean fashion.
>> > script compiler ERROR: command expected
>> > ----line 1 command 1 of 
>> > /home/admin/0/cells/2/sage0-size500.jmol?1273563709:
>> >          >>>> <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"> <<<<
>> > script ERROR: script compiler ERROR: command expected
>> > ----line 1 command 1 of 
>> > /home/admin/0/cells/2/sage0-size500.jmol?1273563709:
>> >          >>>> <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"> <<<<
>> > eval ERROR:
>> > ----line 1 command 1:
>> >         script >> "/home/admin/0/cells/2/sage0-size500.jmol?1273563709" <<
>>
>>   Does jmol work from the command line?
>
> How do I test that?

  You should be able to run it with:

$ sage -sh
$ jmol

or

$ <base-dir-of-sage>/local/bin/jmol

in case you have a system wide jmol.

>>   But I am doing some extra tests in with openjdk, and noticed that it
>> may not work correctly sometimes if the computer
>> is not "almost idle" when loading the applet. I did some debugging
>> yesterday to try to find some problems in opendjk,
>> and currently, my guess is some pthread_cond_timedwait timing out, and
>> doing "evil" things, based on the kinds of
>> stack/data corruptions I found when loading the plugin under a very high 
>> load...
>>   Either way, you should open a bug report at ubuntu, as it may be
>> some small detail preventing it work correctly.
>
> Under which package?  openjdk-6-jre ?

  Probably, but I am sorry I don't use Ubuntu, but that should reach
the proper people.

[btw forgive my comments about some pthread_cond_timedwait timing out, I found
a weird behavior; if I do:
(gdb) handle SIGSEGV nostop noprint
(gdb) c
it just works... kind hard to debug possible problems this way ...]

> regards,
> Jan
>
> --
>   .~.
>   /V\     Jan Groenewald
>  /( )\    www.aims.ac.za
>  ^^-^^
>
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Paulo

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