On 08/24/2010 08:01 PM, William Stein wrote:
> On Tue, Aug 24, 2010 at 1:38 PM, William Stein <wst...@gmail.com> wrote:
>> On Mon, Aug 23, 2010 at 8:25 PM, Jonathan Hanke <jonha...@gmail.com> wrote:
>>> Hi,
>>>
>>> I'm trying to build sage 4.5.2 on a Sun Fire X4450 server (Intel Xenon
>>> processors) running Redhat linux (Enterprise edition), and get an error when
>>> building Atlas in the make script.  Any comments are appreciated.  Thanks,
>>
>> I just tried building 4.5.3.alpha2 on *your* computer (rosemary) in
>> /home/wstein/build/sage-4.5.3.alpha2 and it worked fine.  Note that I
>> set this environment variable:
>>
>>  export SAGE_FAT_BINARY=yes
>>
>> This changes how ATLAS is built to use a sort of "lowest common
>> denominator" configuration.
>> You might try that.   It can potentially make numerical linear algebra
>> slower for you, but I doubt
>> you do a lot of that.
> 
> I waited for the Sage testsuite to run on rosemary (with
> sage-4.5.3.alpha2), and interestingly
> there are a huge number of failures, despite the building completing
> fine.  It looks like
> every failure is "ImportError: No module named scipy".  This suggests
> that despite the build
> of Sage exiting with an error, for some reason the exit code was still
> zero, so the testsuite got run.
> Checking further I see that PIL failed to build:
> 
> /usr/bin/ld: skipping incompatible /usr/lib/libjpeg.so when searching for 
> -ljpeg
> /usr/bin/ld: /usr/local/lib/libpython2.6.a(abstract.o): relocation 
> R_X86_64_32 a
> gainst `a local symbol' can not be used when making a shared object; 
> recompile w
> ith -fPIC
> /usr/local/lib/libpython2.6.a: could not read symbols: Bad value
> collect2: ld returned 1 exit status
> error: command 'gcc' failed with exit status 1
> Error building PIL: 'Error installing PIL'
> 
> real    0m10.521s
> user    0m8.155s
> sys     0m2.290s
> sage: An error occurred while installing pil-1.1.6.p2
> 
> --
> 
> This means that building Sage-4.5.3 at least is totally broken on
> rosemary.math.uga.edu.  This could be the result of you installing a
> new systemwide package, or something else (I don't know).


The PIL error is

http://trac.sagemath.org/sage_trac/ticket/9864

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