Do you want me to remove all the files that were created from the previous
make?
I had set SAGE_KEEP_BUILT_SPKGS=yes. So as soon as I retried make. I got
the same error again.
I have attached copy of my terminal in a text file.
On Thursday, December 12, 2013 12:32:24 AM UTC-8, Jeroen Demeyer wrote:
>
> I don't immediately see what the problem is. Does it work if you simply
> type "make" again?
>
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amit@linux-2nmt:~/Software/sage-5.12> make
cd spkg && \
"../spkg/pipestatus" \
"env SAGE_PARALLEL_SPKG_BUILD='' ./install all 2>&1" \
"tee -a ../logs/install.log"
*** ALL ENVIRONMENT VARIABLES BEFORE BUILD: ***
}
ALSA_CONFIG_PATH=/etc/alsa-pulse.conf
COLORTERM=gnome-terminal
CONFIG_SITE=/usr/share/site/x86_64-unknown-linux-gnu
CPU=x86_64
CSHEDIT=emacs
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-wAf8caYXzt,guid=98003fa7dafa608ba8cffbe00000002e
DESKTOP_SESSION=gnome
DISPLAY=:0.0
FROM_HEADER=
G_BROKEN_FILENAMES=1
GDMSESSION=gnome
G_FILENAME_ENCODING=@locale,UTF-8,ISO-8859-15,CP1252
GJS_DEBUG_OUTPUT=stderr
GJS_DEBUG_TOPICS=JS ERROR;JS LOG
GNOME_DESKTOP_SESSION_ID=this-is-deprecated
GNOME_KEYRING_CONTROL=/run/user/amit/keyring-FDd20n
GNOME_KEYRING_PID=1604
GPG_AGENT_INFO=/run/user/amit/keyring-FDd20n/gpg:0:1
GPG_TTY=/dev/pts/0
GTK_IM_MODULE=cedilla
GTK_MODULES=canberra-gtk-module
HISTSIZE=1000
HOME=/home/amit
HOST=linux-2nmt.site
HOSTNAME=linux-2nmt.site
HOSTTYPE=x86_64
ICEAUTHORITY=/home/amit/.ICEauthority
INPUTRC=/home/amit/.inputrc
JAVA_BINDIR=/usr/lib64/jvm/jre/bin
JAVA_HOME=/usr/lib64/jvm/jre
JAVA_ROOT=/usr/lib64/jvm/jre
JRE_HOME=/usr/lib64/jvm/jre
LANG=en_US.UTF-8
LESS_ADVANCED_PREPROCESSOR=no
LESSCLOSE=lessclose.sh %s %s
LESSKEY=/etc/lesskey.bin
LESS=-M -I -R
LESSOPEN=lessopen.sh %s
LIBGL_DRIVERS_PATH=/usr/lib/dri:/usr/lib64/dri
LOGNAME=amit
LS_COLORS=no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.xz=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
LS_OPTIONS=-N --color=tty -T 0
MACHTYPE=x86_64-suse-linux
MAIL=/var/spool/mail/amit
MAKEFLAGS=
MAKELEVEL=1
MANPATH=/usr/local/man:/usr/share/man
mc=() { . /usr/share/mc/mc-wrapper.sh
MFLAGS=
MINICOM=-c on
MORE=-sl
NNTPSERVER=news
OSTYPE=linux
PAGER=less
PATH=/home/amit/Software/sage-5.12/spkg/bin:/home/amit/Software/sage-5.12/local/bin:/home/amit/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:.
PROFILEREAD=true
PWD=/home/amit/Software/sage-5.12/spkg
PYTHONPATH=/home/amit/Software/sage-5.12/local
PYTHONSTARTUP=/etc/pythonstart
QT_IM_MODULE=xim
QT_IM_SWITCHER=imsw-multi
QT_SYSTEM_DIR=/usr/share/desktop-data
SAGE_KEEP_BUILT_SPKGS=yes
SAGE_LOCAL=/home/amit/Software/sage-5.12/local
SAGE_LOGS=/home/amit/Software/sage-5.12/logs/pkgs
SAGE_PARALLEL_SPKG_BUILD=
SAGE_ROOT=/home/amit/Software/sage-5.12
SAGE_SPKG_INST=/home/amit/Software/sage-5.12/spkg/installed
SDL_AUDIODRIVER=pulse
SESSION_MANAGER=local/linux-2nmt.site:@/tmp/.ICE-unix/1626,unix/linux-2nmt.site:/tmp/.ICE-unix/1626
SHELL=/bin/bash
SHLVL=4
SSH_AUTH_SOCK=/run/user/amit/keyring-FDd20n/ssh
TERM=xterm
TMPDIR=/tmp
USER=amit
USERNAME=amit
_=/usr/bin/env
WINDOWID=41943046
WINDOWMANAGER=/usr/bin/gnome
WINDOWPATH=7
XAUTHLOCALHOSTNAME=localhost
XAUTHORITY=/var/run/gdm/auth-for-amit-Q7oYpg/database
XCURSOR_THEME=DMZ
XDG_CONFIG_DIRS=/etc/xdg
XDG_DATA_DIRS=/usr/share
XDG_MENU_PREFIX=gnome-
XDG_RUNTIME_DIR=/run/user/amit
XDG_SEAT=seat0
XDG_SESSION_COOKIE=2efb2a98f81a2a6b3977fa240000051f-1386871907.275055-644466155
XDG_SESSION_ID=2
XDG_VTNR=7
XKEYSYMDB=/usr/X11R6/lib/X11/XKeysymDB
XMODIFIERS=@im=local
XNLSPATH=/usr/share/X11/nls
XSESSION_IS_UP=yes
***********************************************
make[1]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make base
make[2]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[2]: Nothing to be done for `base'.
make[2]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
env SAGE_BUILD_TOOLCHAIN=yes make toolchain
make[2]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[2]: Nothing to be done for `toolchain'.
make[2]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make toolchain-deps
make[2]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make /home/amit/Software/sage-5.12/spkg/installed/zlib-1.2.8.p0
make[3]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[3]: `/home/amit/Software/sage-5.12/spkg/installed/zlib-1.2.8.p0' is up to
date.
make[3]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make /home/amit/Software/sage-5.12/spkg/installed/mpir-2.6.0.p3
make[3]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[3]: `/home/amit/Software/sage-5.12/spkg/installed/mpir-2.6.0.p3' is up to
date.
make[3]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make /home/amit/Software/sage-5.12/spkg/installed/mpfr-3.1.2.p0
make[3]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[3]: `/home/amit/Software/sage-5.12/spkg/installed/mpfr-3.1.2.p0' is up to
date.
make[3]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make /home/amit/Software/sage-5.12/spkg/installed/mpc-1.0.p0
make[3]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[3]: `/home/amit/Software/sage-5.12/spkg/installed/mpc-1.0.p0' is up to
date.
make[3]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make /home/amit/Software/sage-5.12/spkg/installed/ppl-1.1pre9.p0
make[3]: Entering directory `/home/amit/Software/sage-5.12/spkg'
make[3]: `/home/amit/Software/sage-5.12/spkg/installed/ppl-1.1pre9.p0' is up to
date.
make[3]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make[2]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make all-sage
make[2]: Entering directory `/home/amit/Software/sage-5.12/spkg'
/home/amit/Software/sage-5.12/spkg/pipestatus "sage-spkg ${SAGE_SPKG_OPTS}
flint-2.3.p1 2>&1" "tee -a
/home/amit/Software/sage-5.12/logs/pkgs/flint-2.3.p1.log"
Found package flint-2.3.p1 in spkg/standard/flint-2.3.p1.spkg
flint-2.3.p1
====================================================
Moving old directory flint-2.3.p1 to
/home/amit/Software/sage-5.12/spkg/build/old...
Extracting package /home/amit/Software/sage-5.12/spkg/standard/flint-2.3.p1.spkg
-rw-r--r-- 1 amit users 742578 May 15 2013
/home/amit/Software/sage-5.12/spkg/standard/flint-2.3.p1.spkg
Finished extraction
****************************************************
Host system:
Linux linux-2nmt.site 3.4.63-2.44-desktop #1 SMP PREEMPT Wed Oct 2 11:18:32 UTC
2013 (d91a619) x86_64 x86_64 x86_64 GNU/Linux
****************************************************
C compiler: gcc
C compiler version:
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/home/amit/Software/sage-5.12/local/lib/gcc/x86_64-unknown-linux-gnu/4.7.3/lto-wrapper
Target: x86_64-unknown-linux-gnu
Configured with: ../src/configure --prefix=/home/amit/Software/sage-5.12/local
--with-local-prefix=/home/amit/Software/sage-5.12/local
--with-gmp=/home/amit/Software/sage-5.12/local
--with-mpfr=/home/amit/Software/sage-5.12/local
--with-mpc=/home/amit/Software/sage-5.12/local --with-system-zlib
--disable-multilib --disable-nls
Thread model: posix
gcc version 4.7.3 (GCC)
****************************************************
Patching FLINT.
patching file configure
patching file configure
Configuring FLINT.
Configuring...x86_64-Linux
Testing __builtin_popcountl...yes
Testing native popcount...yes
Building FLINT shared library.
make[3]: Entering directory
`/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1/src'
if [ "1" -eq "1" ]; then \
make libflint.so; \
fi
make[4]: Entering directory
`/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1/src'
gcc -fPIC -O2 -g -ansi -pedantic -Wall -mpopcnt -funroll-loops
-I/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1/src
-I/home/amit/Software/sage-5.12/local/include
-I/home/amit/Software/sage-5.12/local/include
-I/home/amit/Software/sage-5.12/local/include -c clz_tab.c -o build/clz_tab.lo;
/home/amit/Software/sage-5.12/local/lib/gcc/x86_64-unknown-linux-gnu/4.7.3/cc1:
error while loading shared libraries: libmpc.so.3: cannot open shared object
file: No such file or directory
make[4]: *** [build/clz_tab.lo] Error 1
make[4]: Leaving directory
`/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1/src'
make[3]: *** [library] Error 2
make[3]: Leaving directory
`/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1/src'
Error: Failed to build FLINT shared library.
real 0m1.374s
user 0m0.137s
sys 0m0.071s
************************************************************************
Error installing package flint-2.3.p1
************************************************************************
Please email sage-devel (http://groups.google.com/group/sage-devel)
explaining the problem and including the relevant part of the log file
/home/amit/Software/sage-5.12/logs/pkgs/flint-2.3.p1.log
Describe your computer, operating system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1 and type 'make' or
whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1' &&
'/home/amit/Software/sage-5.12/sage' --sh)
When you are done debugging, you can type "exit" to leave the subshell.
************************************************************************
make[2]: *** [/home/amit/Software/sage-5.12/spkg/installed/flint-2.3.p1] Error 1
make[2]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/amit/Software/sage-5.12/spkg'
real 0m2.886s
user 0m0.554s
sys 0m0.207s
***************************************************************
Error building Sage.
The following package(s) may have failed to build:
package: flint-2.3.p1
log file: /home/amit/Software/sage-5.12/logs/pkgs/flint-2.3.p1.log
build directory: /home/amit/Software/sage-5.12/spkg/build/flint-2.3.p1
The build directory may contain configuration files and other potentially
helpful information. WARNING: if you now run 'make' again, the build
directory will, by default, be deleted. Set the environment variable
SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this.
make: *** [build] Error 1
amit@linux-2nmt:~/Software/sage-5.12>
