Alright so I downloaded 6.2 beta 5, ran it, and fixed a couple issues with
that rebasing script you gave me and other things that we figured out
before.
I do think the build has progressed more than my previous attempts but now
it got stuck with this error:
====================================================
Setting up build directory for rpy2-2.3.8
Finished set up
****************************************************
...
copying ./rpy/interactive/tests/__init__.py ->
build/lib.cygwin-1.7.28-i686-2.7/rpy2/interactive/tests
running build_ext
"/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R/bin/R" CMD
config --ldflags
"/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R/bin/R" CMD
config --cppflags
"/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R/bin/R" CMD
config LAPACK_LIBS
returned an empty string.
returned an empty string.
"/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R/bin/R" CMD
config BLAS_LIBS
returned an empty string.
returned an empty string.
Configuration for R as a library:
include_dirs:
('/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R//include',)
libraries: ('R',)
library_dirs:
('/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R//lib',
'/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib')
extra_link_args: ()
# OSX-specific (included in extra_link_args)
framework_dirs: ()
frameworks: ()
building 'rpy2.rinterface._rinterface' extension
creating build/temp.cygwin-1.7.28-i686-2.7
creating build/temp.cygwin-1.7.28-i686-2.7/rpy
creating build/temp.cygwin-1.7.28-i686-2.7/rpy/rinterface
gcc -I/usr/include/ncurses -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv
-O3 -Wall -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1
-DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface
-I/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/include/python2.7
-I/home/evan.oman/sage-6.2-beta5/sage-6.2.beta5/local/lib/R//include -c
./rpy/rinterface/_rinterface.c -o
build/temp.cygwin-1.7.28-i686-2.7/./rpy/rinterface/_rinterface.o
In file included from ./rpy/rinterface/_rinterface.c:124:0:
./rpy/rinterface/na_values.c:209:9: error: initializer element is not
constant
&PyLong_Type, /*tp_base*/
^
./rpy/rinterface/na_values.c:209:9: error: (near initialization for
'NAInteger_Type.tp_base')
./rpy/rinterface/na_values.c:407:9: error: initializer element is not
constant
&PyLong_Type, /*tp_base*/
^
./rpy/rinterface/na_values.c:407:9: error: (near initialization for
'NALogical_Type.tp_base')
./rpy/rinterface/na_values.c:593:9: error: initializer element is not
constant
&PyFloat_Type, /*tp_base*/
^
./rpy/rinterface/na_values.c:593:9: error: (near initialization for
'NAReal_Type.tp_base')
./rpy/rinterface/na_values.c:695:9: error: initializer element is not
constant
&PyString_Type, /*tp_base*/
^
./rpy/rinterface/na_values.c:695:9: error: (near initialization for
'NACharacter_Type.tp_base')
./rpy/rinterface/na_values.c:862:9: error: initializer element is not
constant
&PyComplex_Type, /*tp_base*/
^
./rpy/rinterface/na_values.c:862:9: error: (near initialization for
'NAComplex_Type.tp_base')
In file included from ./rpy/rinterface/_rinterface.c:125:0:
./rpy/rinterface/sexp.c: In function 'Sexp_rclass_set':
./rpy/rinterface/sexp.c:369:5: warning: return makes integer from pointer
without a cast [enabled by default]
return NULL;
^
./rpy/rinterface/sexp.c: In function 'Sexp_init':
./rpy/rinterface/sexp.c:711:13: warning: unused variable 'copy'
[-Wunused-variable]
PyObject *copy = Py_True;
^
In file included from ./rpy/rinterface/_rinterface.c:104:0:
./rpy/rinterface/_rinterface.c: At top level:
./rpy/rinterface/embeddedr.h:20:20: warning: '_Rpy_PreserveObject' declared
'static' but never defined [-Wunused-function]
static SexpObject* _Rpy_PreserveObject(SEXP object);
^
In file included from ./rpy/rinterface/_rinterface.c:129:0:
./rpy/rinterface/sequence.c:2190:1: warning: 'ComplexVectorSexp_AsSexp'
defined but not used [-Wunused-function]
ComplexVectorSexp_AsSexp(PyObject *pyfloat) {
^
error: command 'gcc' failed with exit status 1
real 0m1.977s
user 0m0.397s
sys 0m0.933s
************************************************************************
Error installing package rpy2-2.3.8
************************************************************************
I thought it might have something to do with
this http://trac.sagemath.org/ticket/13350 but I am not sure how to apply
the patch listed there(if it is needed on 6.2).
On Monday, March 31, 2014 7:06:42 AM UTC-5, Jean-Pierre Flori wrote:
>
>
>
> On Friday, March 21, 2014 9:31:40 PM UTC+1, Evan Oman wrote:
>>
>> Alright here is the latest error after running the -b version of build,
>> doesn't mention any dll's but is it the same issue?
>>
>> Compiling sage/ext/interpreters/wrapper_el.pyx because it changed.
>> Cythonizing sage/algebras/letterplace/free_algebra_element_letterplace.pyx
>> Traceback (most recent call last):
>> File "setup.py", line 536, in <module>
>> Cythonizing sage/gsl/interpolation.pyx
>> force=force)
>> File
>> "/home/evan.oman/sage-6.1/local/lib/python2.7/site-packages/Cython/Build/Dependencies.py",
>>
>> line 747, in cythonize
>> Cythonizing sage/media/channels.pyx
>> pool.map(cythonize_one_helper, to_compile)
>> File
>> "/home/evan.oman/sage-6.1/local/lib/python/multiprocessing/pool.py", line
>> 250, in map
>> Cythonizing sage/rings/number_field/totallyreal.pyx
>> return self.map_async(func, iterable, chunksize).get()
>> File
>> "/home/evan.oman/sage-6.1/local/lib/python/multiprocessing/pool.py", line
>> 554, in get
>> raise self._value
>> AttributeError: 'Cython.Plex.Actions.Call' object has no attribute
>> 'perform'
>>
> No idea at first...
>
> FYI, I successfully compiled 6.2.beta5 within a 32 bit Windows XP VM using
> the fix for bzip2 at http://trac.sagemath.org/ticket/15967 (and nothing
> more IIRC).
> Wouldn't you mind trying to follow the same route?
> It should be easier to debug.
> (On Windows 7, you would also need http://trac.sagemath.org/ticket/15339or
> pass SAGE_TUNE_GF2X=no which should disable tuning and give you a slower
> GF2X but easier to get compiled.)
>
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