On Fri, 5 Sep 2014, Francois Bissey wrote:
Sorry you should have started a sage shell first
/home/jm58660/r-compile-test/sage-6.3/sage -sh
And then cd and gcc? Here:
(sage-sh) jm58660@localhost:sage-6.3$ cd
/home/jm58660/r-compile-test/sage-6.3/local/var/tmp/sage/build/r-3.1.1.p0/src/src/main
(sage-sh) jm58660@localhost:main$ gcc -std=gnu99 -Wl,--export-dynamic -fopenmp
-L/home/jm58660/r-compile-test/sage-6.3/local/lib/ -o R.bin Rmain.o
-L../../lib -lR -Wl,--verbose
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==================================================
attempt to open
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/crt1.o succeeded
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/crt1.o
attempt to open
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/crti.o succeeded
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/crti.o
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/crtbegin.o
succeeded
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/crtbegin.o
attempt to open Rmain.o succeeded
Rmain.o
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libR.so
failed
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libR.a
failed
attempt to open ../../lib/libR.so succeeded
-lR (../../lib/libR.so)
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libgomp.so failed
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libgomp.a
failed
attempt to open ../../lib/libgomp.so failed
attempt to open ../../lib/libgomp.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgomp.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgomp.a failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgomp.so
succeeded
-lgomp (/usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgomp.so)
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc.so
failed
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc.a
failed
attempt to open ../../lib/libgcc.so failed
attempt to open ../../lib/libgcc.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc.a failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc.so failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc.a succeeded
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc_s.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc_s.a failed
attempt to open ../../lib/libgcc_s.so failed
attempt to open ../../lib/libgcc_s.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc_s.so
failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc_s.a failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc_s.so
succeeded
-lgcc_s (/usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc_s.so)
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libpthread.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libpthread.a failed
attempt to open ../../lib/libpthread.so failed
attempt to open ../../lib/libpthread.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libpthread.so
failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libpthread.a
failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libpthread.so
failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libpthread.a failed
attempt to open
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/libpthread.so
succeeded
opened script file
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/libpthread.so
opened script file
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/libpthread.so
attempt to open /lib64/libpthread.so.0 succeeded
/lib64/libpthread.so.0
attempt to open /usr/lib64/libpthread_nonshared.a succeeded
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libc.so
failed
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libc.a
failed
attempt to open ../../lib/libc.so failed
attempt to open ../../lib/libc.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libc.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libc.a failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libc.so failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libc.a failed
attempt to open
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/libc.so succeeded
opened script file
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/libc.so
opened script file
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/libc.so
attempt to open /lib64/libc.so.6 succeeded
/lib64/libc.so.6
attempt to open /usr/lib64/libc_nonshared.a succeeded
(/usr/lib64/libc_nonshared.a)elf-init.oS
attempt to open /lib64/ld-linux-x86-64.so.2 succeeded
/lib64/ld-linux-x86-64.so.2
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc.so
failed
attempt to open /home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc.a
failed
attempt to open ../../lib/libgcc.so failed
attempt to open ../../lib/libgcc.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc.a failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc.so failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc.a succeeded
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc_s.so failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib//libgcc_s.a failed
attempt to open ../../lib/libgcc_s.so failed
attempt to open ../../lib/libgcc_s.a failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc_s.so
failed
attempt to open
/home/jm58660/r-compile-test/sage-6.3/local/lib/../lib64/libgcc_s.a failed
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc_s.so
succeeded
-lgcc_s (/usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc_s.so)
attempt to open /usr/lib/gcc/x86_64-redhat-linux/4.8.3/crtend.o succeeded
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/crtend.o
attempt to open
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/crtn.o succeeded
/usr/lib/gcc/x86_64-redhat-linux/4.8.3/../../../../lib64/crtn.o
libf77blas.so.3 needed by ../../lib/libR.so
found libf77blas.so.3 at
/home/jm58660/r-compile-test/sage-6.3/local/lib/libf77blas.so.3
libatlas.so.3 needed by ../../lib/libR.so
found libatlas.so.3 at
/home/jm58660/r-compile-test/sage-6.3/local/lib/libatlas.so.3
libgfortran.so.3 needed by ../../lib/libR.so
found libgfortran.so.3 at /usr/local/lib64/libgfortran.so.3
libm.so.6 needed by ../../lib/libR.so
found libm.so.6 at /lib64/libm.so.6
libquadmath.so.0 needed by ../../lib/libR.so
found libquadmath.so.0 at /lib64/libquadmath.so.0
libreadline.so.6 needed by ../../lib/libR.so
found libreadline.so.6 at
/home/jm58660/r-compile-test/sage-6.3/local/lib/libreadline.so.6
liblzma.so.5 needed by ../../lib/libR.so
found liblzma.so.5 at /lib64/liblzma.so.5
librt.so.1 needed by ../../lib/libR.so
found librt.so.1 at /lib64/librt.so.1
libdl.so.2 needed by ../../lib/libR.so
found libdl.so.2 at /lib64/libdl.so.2
libicuuc.so.50 needed by ../../lib/libR.so
found libicuuc.so.50 at /lib64/libicuuc.so.50
libicui18n.so.50 needed by ../../lib/libR.so
found libicui18n.so.50 at /lib64/libicui18n.so.50
ld-linux-x86-64.so.2 needed by ../../lib/libR.so
found ld-linux-x86-64.so.2 at /lib64/ld-linux-x86-64.so.2
libgcc_s.so.1 needed by
/home/jm58660/r-compile-test/sage-6.3/local/lib/libf77blas.so.3
found libgcc_s.so at /usr/lib/gcc/x86_64-redhat-linux/4.8.3/libgcc_s.so
libtinfo.so.5 needed by
/home/jm58660/r-compile-test/sage-6.3/local/lib/libreadline.so.6
found libtinfo.so.5 at
/home/jm58660/r-compile-test/sage-6.3/local/lib/libtinfo.so.5
libicudata.so.50 needed by /lib64/libicuuc.so.50
found libicudata.so.50 at /lib64/libicudata.so.50
libstdc++.so.6 needed by /lib64/libicuuc.so.50
found libstdc++.so.6 at /usr/local/lib64/libstdc++.so.6
/home/jm58660/r-compile-test/sage-6.3/local/lib/libf77blas.so.3: undefined
reference to `_gfortran_transfer_integer_write@GFORTRAN_1.4'
/home/jm58660/r-compile-test/sage-6.3/local/lib/libf77blas.so.3: undefined
reference to `_gfortran_transfer_character_write@GFORTRAN_1.4'
collect2: error: ld returned 1 exit status
--
Jori Mäntysalo
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