Le samedi 16 février 2019 10:20:51 UTC+1, François Bissey a écrit : > > Good diagnostics there. I’d recommend > https://sqlite.org/2019/sqlite-autoconf-3270100.tar.gz > as the sources to use.
Thanks ! I'll try that > Pushing to use system sqlite What do you mean ? Do you mean removing "our" sqlite and dependig on system's sqlite ? Nice idea... except for Cygwin,and/or WSL... > is > also an healthy option. > > François > > > On 16/02/2019, at 22:15, Emmanuel Charpentier <[email protected] > <javascript:>> wrote: > > > > Ahem... > > > > It turns put that I can't reproduce my *origonal* problem : sustem's > upgrade seems to ghave fixed rthe problem. > > > > Sorry for the noise... > > > > However, "spdep" still doesn't install, but the problem si totally > different : its dependency "sf" doesn't compile due to a missing library > call in ... libgdal.so, of all things, which claims : > > > > /usr/bin/ld: /usr/lib/libgdal.so: undefined reference to > `sqlite3_column_origin_name' > > /usr/bin/ld: /usr/lib/libgdal.so: undefined reference to > `sqlite3_column_table_name' > > collect2: error: ld returned 1 exit status > > /usr/bin/ld: /usr/lib/libgdal.so: undefined reference to > `sqlite3_column_origin_name' > > /usr/bin/ld: /usr/lib/libgdal.so: undefined reference to > `sqlite3_column_table_name' > > collect2: error: ld returned 1 exit status > > > > This is more explainable: "our" sqlite3 is at 3.22, whereas system's > sqlite3 is at 3.26+fossilbc891ac6b (whatever that means...). > > > > I might try to update "our" sqlite3 *if* I can figure what is the > "right" source.... Debian unstable has 3.27 ; I might try that. > > > > Hints ? Suggestions ? > > > > > > Le samedi 16 février 2019 10:00:45 UTC+1, François Bissey a écrit : > > Can you send us the error message you get when installing sp/spdep? > > What version of openblas do you have on your system? The latest beta > > of sage uses openblas 0.3.5 which is latest available release. > > > > François > > > > > On 16/02/2019, at 21:46, Emmanuel Charpentier <[email protected]> > wrote: > > > > > > Dear list, > > > > > > I started to get strange errors when installing some R packages ("sp" > and "spdep", for the record). Ultimately, it boils down to the fact that > those libraries need to use library system calls that exist in the system's > openblas (these packages do install fine in system's R) but not in "our" > openblas. > > > > > > A possible workaround would be to install Atlas systemwide and to > point SAGE_ATLAS_LIB to that. But using ATLAS has some drawbacks (e. g. > necessity to manually recompile in order to optimize BLAS and LAPACK). > Hence my question : > > > > > > Is there a way to install (i. e. compile) Sage using system's BLAS and > LAPACK provided by system's openblas ? > > > > > > PS : another workaround would be ti upgrade "our" openblas to a > version supporting the needed calls. I do not know how to do this, and it > sems soewhat intricate. > > > > > > > > > -- > > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected]. > > > To post to this group, send email to [email protected]. > > > Visit this group at https://groups.google.com/group/sage-devel. > > > For more options, visit https://groups.google.com/d/optout. > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to [email protected] <javascript:>. > > To post to this group, send email to [email protected] > <javascript:>. > > Visit this group at https://groups.google.com/group/sage-devel. > > For more options, visit https://groups.google.com/d/optout. > > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To post to this group, send email to [email protected]. Visit this group at https://groups.google.com/group/sage-devel. For more options, visit https://groups.google.com/d/optout.
