Ok so here is an easy way to reproduce the sleep problem:

With topcom installed, I get a bunch of sleep calls when I compute the 
volume of a triangle:

sage: p = Polyhedron([(0,1/3),(0,1),(1/3,1)])
sage: %prun p.volume()

         750 function calls (749 primitive calls) in 0.216 seconds

   Ordered by: internal time

   ncalls  tottime  percall  cumtime  percall filename:lineno(function)
        5    0.201    0.040    0.201    0.040 {time.sleep}
        3    0.006    0.002    0.006    0.002 {posix.read}
        1    0.004    0.004    0.004    0.004 {posix.forkpty}
        4    0.001    0.000    0.001    0.000 {select.select}
        1    0.000    0.000    0.001    0.001 
point_configuration.py:1291(volume)
        2    0.000    0.000    0.215    0.107 
point_configuration.py:671(_TOPCOM_communicate)
        1    0.000    0.000    0.216    0.216 base.py:5201(volume)
       21    0.000    0.000    0.000    0.000 {posix.lstat}
        1    0.000    0.000    0.010    0.010 ptyprocess.py:172(spawn)
        1    0.000    0.000    0.000    0.000 matrix_space.py:720(__call__)
        1    0.000    0.000    0.000    0.000 ptyprocess.py:152(__init__)
        1    0.000    0.000    0.000    0.000 
matrix_space.py:432(__classcall__)
        2    0.000    0.000    0.214    0.107 
point_configuration.py:597(_TOPCOM_exec)
        1    0.000    0.000    0.216    0.216 <string>:1(<module>)
        6    0.000    0.000    0.000    0.000 expect.py:13(new_data)
        4    0.000    0.000    0.002    0.001 expect.py:91(expect_loop)
        4    0.000    0.000    0.000    0.000 contextlib.py:21(__exit__)
        1    0.000    0.000    0.000    0.000 {method 'close' of 
'_io.FileIO' objects}
        4    0.000    0.000    0.000    0.000 ptyprocess.py:670(isalive)
        1    0.000    0.000    0.000    0.000 
matrix_space.py:103(get_matrix_class)
        4    0.000    0.000    0.000    0.000 
spawnbase.py:192(compile_pattern_list)
        2    0.000    0.000    0.101    0.050 pty_spawn.py:526(send)
       21    0.000    0.000    0.000    0.000 posixpath.py:132(islink)
        3    0.000    0.000    0.000    0.000 base.py:2062(dim)

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