I figured out that the error I posted depended on an ambient variable that I
have set um in my rc files, namely
export _JAVA_OPTIONS="-Dawt.useSystemAAFontSettings=on -Dswing.aatext=true"

with this `java -version` returns

Picked up _JAVA_OPTIONS: -Dawt.useSystemAAFontSettings=on -Dswing.aatext=true
openjdk version "1.8.0_171"
OpenJDK Runtime Environment (IcedTea 3.8.0) (Gentoo icedtea-3.8.0)
OpenJDK 64-Bit Server VM (build 25.171-b11, mixed mode)

and `sage.interfaces.jmoldata.JmolData.is_jvm_available` fails. This is independent of python3. On the same note: the current implementation of `is_jvm_available` is not really robust and I should open a ticket about this; any suggestion for a better implementation?
S.


* Dima Pasechnik <dimp...@gmail.com> [2019-11-03 19:16:35]:

On Sun, 3 Nov 2019, 16:57 VulK, <etn45...@gmail.com> wrote:

I have issues with a symlink when installing ipython:

"""
  ...
  Successfully installed ipython-5.8.0
  Cleaning up...
  Removed build tracker '/tmp/pip-req-tracker-x6b62y1w'

  real    0m3.382s
  user    0m3.027s
  sys     0m0.498s
  Copying package files from temporary location
/opt/sage-python3/local/var/tmp/sage/build/ipython-5.8.0/inst to
/opt/sage-python3/local
  cp: not writing through dangling symlink
'/opt/sage-python3/local/./bin/ipython'
  ************************************************************************
  Error copying files for ipython-5.8.0.
  ************************************************************************
  ...
"""

This install was in a dir where previously I had installed using python3
and
with ./configure --with-python=3 but I ran make maintainer-clean before
attempting to compile public/python3_switch



this should be fixed in
https://trac.sagemath.org/ticket/28673


S.




* Frédéric Chapoton <fchapot...@gmail.com> [2019-11-03 05:18:13]:

>Could please some of the many plus-one-ing people try the branch at #28660
>and report there if it works for them, namely builds a working
python3-sage
>by default ?
>
>Frédéric
>
>Le dimanche 27 octobre 2019 01:58:23 UTC+2, Volker Braun a écrit :
>>
>> Maybe I missed it, but I didn't find a ticket for that. I think now
would
>> be a good time to flip the switch, though. Any thoughts?
>>
>
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