I have set the variable TMPDIR to a directory with sufficient space, and the compilation of scipy was successfull. Thank you very much, Dima!
El sábado, 4 de enero de 2020, 11:56:12 (UTC-5), Mikhail Malakhaltsev escribió: > > >Probably your /tmp is not where you think it is. > >Could you post the output of the shell command > > >df -h > You are right, Dima. > The output is > ************************************** > Filesystem Size Used Avail Use% Mounted on > devtmpfs 9.8G 0 9.8G 0% /dev > tmpfs 9.8G 98M 9.7G 1% /dev/shm > tmpfs 9.8G 9.8M 9.8G 1% /run > tmpfs 9.8G 0 9.8G 0% /sys/fs/cgroup > /dev/sda7 40G 15G 23G 39% / > /dev/sda1 360M 5.0M 355M 2% /boot/efi > /dev/sda2 124M 1.7M 116M 2% /tmp > /dev/sda8 538G 410G 128G 77% /home > /dev/sda3 322G 95G 212G 31% /home/prince_add > tmpfs 2.0G 20K 2.0G 1% /run/user/461 > tmpfs 2.0G 36K 2.0G 1% /run/user/1000 > ******************************************** > So /tmp is mounted to /dev/sda2 with only 124M :( > However, up to now I had no problem with it. > So can I leave /tmp as is but change some variable for the compilation > process use another space? > Thank you very much. > > El sábado, 4 de enero de 2020, 11:17:03 (UTC-5), Dima Pasechnik escribió: >> >> Probably your /tmp is not where you think it is. >> Could you post the output of the shell command >> >> df -h >> >> >> On Sat, Jan 4, 2020 at 11:24 PM Mikhail Malakhaltsev <[email protected]> >> wrote: >> > >> > Dear colleagues, >> > I have the following problem. >> > >> > The compilation of SAGE 9.0 from source is terminated by >> > ********************************************************************* >> > [scipy-1.2.0] Fatal Error: error writing to /tmp/ccIBG4L0.s: No >> space left on device >> > [scipy-1.2.0] compilation terminated. >> > [scipy-1.2.0] gfortran:f77: scipy/fftpack/src/dfftpack/zffti1.f >> > [scipy-1.2.0] scipy/fftpack/src/dfftpack/dfftf1.f:62:0: >> > [scipy-1.2.0] >> > [scipy-1.2.0] END >> > [scipy-1.2.0] >> > [scipy-1.2.0] Fatal Error: error writing to /tmp/ccfIV1qY.s: No >> space left on device >> > [scipy-1.2.0] compilation terminated. >> > [scipy-1.2.0] scipy/fftpack/src/dfftpack/zfftb1.f:64:0: >> > [scipy-1.2.0] >> > [scipy-1.2.0] END >> > [scipy-1.2.0] >> > [scipy-1.2.0] Fatal Error: error writing to /tmp/cc7a1xUc.s: No >> space left on device >> > [scipy-1.2.0] compilation terminated. >> > [scipy-1.2.0] scipy/fftpack/src/dfftpack/zfftf1.f:64:0: >> > [scipy-1.2.0] >> > [scipy-1.2.0] END >> > [scipy-1.2.0] >> > [scipy-1.2.0] Fatal Error: error writing to /tmp/cc9ZGXMf.s: No >> space left on device >> > [scipy-1.2.0] compilation terminated. >> > [scipy-1.2.0] error: Command "gfortran -Wall -g -ffixed-form >> -fno-second-underscore -fPIC -O3 -funroll-loops >> -I/home/prince_add/sage-9.0/local/lib/python3.7/site-packages/numpy/core/include >> >> -c -c scipy/fftpack/src/dfftpack/dfftb1.f -o >> build/temp.linux-x86_64-3.7/scipy/fftpack/src/dfftpack/dfftb1.o" failed >> with exit status 1 >> > [scipy-1.2.0] Running setup.py install for scipy: finished with >> status 'error' >> > >> ******************************************************************************************** >> >> >> > I do not understand what is the problem because /dev/root with >> subdirectory /tmp has 23G free, and the device where I am building SAGE has >> 212 G free. >> > Can you help me? >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-devel" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to [email protected]. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/ff5fe4b3-d3a5-449a-b70f-44191bdb5e9b%40googlegroups.com. >> >> >> > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/e6879c4b-3c44-4b4f-9cff-81b06e7912cf%40googlegroups.com.
