There have been several tickets on segmentation faults concerning the 
singular interface. Since they are all closed, I think this must be an 
unknown case:

sage: R.<x,y> = Integers(7)[]
sage: p = x**2-1
sage: p.factor()


Trying the same with GF works fine:

sage: R.<x,y> = GF(7)[]
sage: p = x**2-1
sage: p.factor()
(x - 1) * (x + 1) 


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