Hi Anne, it appears from your config.log that you did not do make distclean
moreover, it says that R is already installed, and should not get reinstalled. Does Sage start? I guess not. If before the latest git pull you had an oldish Sage (closer to 9.0 than to 9.1) it appears that the build system is totally confused. So you most probably need to do distclean. HTH Dima On Mon, 25 May 2020, 17:28 Anne Schilling, <anne1.schill...@gmail.com> wrote: > Hi Dima, > > I pulled the changes using git in the master branch and started make (or > make distclean). > This is running on MacOS 10.12.6 . > > https://www.math.ucdavis.edu/~anne/config.log > https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log > https://www.math.ucdavis.edu/~anne/dochtml.log > > Thank you! > > Anne > > On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: >> >> On Mon, May 25, 2020 at 7:44 AM Anne Schilling >> <anne1.s...@gmail.com> wrote: >> > >> > >> > >> > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: >> >> >> >> Hi Anne, >> >> >> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >> >>> >> >>> Downloading the Sage mirror list >> >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax >> error: error code: 1010 >> >>> Searching fastest mirror >> >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror >> directly and no proxy set >> >> >> >> >> >> Here's a workaround: >> >> >> >> echo '["http://files.sagemath.org/";]' > upstream/mirror_list >> >> >> >> >> >> I hope this helps, >> >> Matthias >> > >> > >> > Thank you, that got me a lot further. But now it is stuck here: >> > >> > [matplotlib-2.2.5] running install_egg_info >> > [matplotlib-2.2.5] running egg_info >> > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO >> > [matplotlib-2.2.5] writing dependency_links to >> lib/matplotlib.egg-info/dependency_links.txt >> > [matplotlib-2.2.5] writing namespace_packages to >> lib/matplotlib.egg-info/namespace_packages.txt >> > [matplotlib-2.2.5] writing requirements to >> lib/matplotlib.egg-info/requires.txt >> > [matplotlib-2.2.5] writing top-level names to >> lib/matplotlib.egg-info/top_level.txt >> > [matplotlib-2.2.5] reading manifest file >> 'lib/matplotlib.egg-info/SOURCES.txt' >> > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' >> > [matplotlib-2.2.5] writing manifest file >> 'lib/matplotlib.egg-info/SOURCES.txt' >> > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info >> >> > [matplotlib-2.2.5] Installing >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth >> >> > [matplotlib-2.2.5] running install_scripts >> > [matplotlib-2.2.5] writing list of installed files to >> '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p80000gp/T/pip-record-rmt5izi9/install-record.txt' >> >> > [matplotlib-2.2.5] Running setup.py install for matplotlib: >> finished with status 'done' >> > [matplotlib-2.2.5] Removing source in >> /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p80000gp/T/pip-req-build-l19fxrx8 >> >> > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 >> > [matplotlib-2.2.5] Cleaning up... >> > [matplotlib-2.2.5] Removed build tracker >> '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p80000gp/T/pip-req-tracker-rxz0bq3j' >> >> > [matplotlib-2.2.5] >> > [matplotlib-2.2.5] real 6m10.218s >> > [matplotlib-2.2.5] user 0m35.266s >> > [matplotlib-2.2.5] sys 0m4.548s >> > [matplotlib-2.2.5] Copying package files from temporary location >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to >> /Applications/sage/local >> > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 >> > [matplotlib-2.2.5] Deleting temporary build directory >> > [matplotlib-2.2.5] >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 >> > [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg >> > make[2]: *** [all-start] Error 2 >> > >> > real 48m47.186s >> > user 162m58.074s >> > sys 27m3.413s >> > *************************************************************** >> > Error building Sage. >> > >> > The following package(s) may have failed to build (not necessarily >> > during this run of 'make all-start'): >> > >> > * package: r-3.6.2.p0 >> > last build time: May 24 23:28 >> > log file: /Applications/sage/logs/pkgs/r-3.6.2.p0.log >> > build directory: >> /Applications/sage/local/var/tmp/sage/build/r-3.6.2.p0 >> > >> > * documentation: dochtml >> > last build time: May 24 22:43 >> > log file: /Applications/sage/logs/pkgs/../dochtml.log >> > >> > It is safe to delete any log files and build directories, but they >> > contain information that is helpful for debugging build problems. >> > WARNING: If you now run 'make' again, the build directory of the >> > same version of the package will, by default, be deleted. Set the >> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> > >> > make[1]: *** [all-start] Error 1 >> > make: *** [all] Error 2 >> > >> > I can provide the log files if necessary. >> > >> >> Are you building from scratch? >> What is your setup? (Sage nowadays supports building with Homebrew >> packages) >> >> Yes, naturally, without the log files for R and dochtml one cannot say >> what went wrong. >> Also, the top-level config.log woud be useful. >> >> Best >> Dima >> >> > Best, >> > >> > Anne >> > >> > -- >> > You received this message because you are subscribed to the Google >> Groups "sage-devel" group. >> > To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-...@googlegroups.com. >> > To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-devel/9c5525a4-9486-41f9-80f9-8c064fc3be5d%40googlegroups.com. >> >> > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/33360eae-7de2-4cfb-8118-36406ec36d7b%40googlegroups.com > <https://groups.google.com/d/msgid/sage-devel/33360eae-7de2-4cfb-8118-36406ec36d7b%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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