There are several options for the user to enter a knot/link:

1) As a braid closure, as you mentioned.
2) By means of a Gauss code,  Dowker-Thistlethwaite Notation or some other 
similar codification of its planar diagram. For example, there is a way to 
codify a link diagram as a planar representation of a graph.
3) By a list of three dimensional vertices that determine a piecewise 
linear curve (or several of them, if we are talking about links). In 
principle it could also be done by better aproximations of the curve 
(splines or bezier curves), but i think for this purpose just piecewise 
linear is fine. This kind of input would be important if we want it to be 
usable over real world problems, since it is sometimes the case that the 
knot is obtained from experimental data. There is a R package that works 
with this kind of input [1]. 
4) If an interactive editor is integrated in the notebook (like the graph 
editor for example), by drawing it.


One of the goals of the project would be to translate between this 
different possible representations.

[1] http://cran.r-project.org/web/packages/Rknots/index.html

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