I just want to confirm that removing /usr/local64.hg/bin from the path 
solves the problem.

But there is still one doctest failure:

sage -t --long src/sage/tests/cmdline.py
**********************************************************************
File "src/sage/tests/cmdline.py", line 204, in 
sage.tests.cmdline.test_executable
Failed example:
    print out
Expected:
    Found local metadata for sqlalchemy-...
    = SQLAlchemy =
    ...
    SQLAlchemy is the Python SQL toolkit...
Got:
    Cleaning up PYTHONPATH:
      Old: 
":/u/ggeorg/data/sync/software/python:/scratch/userdata/sage-6.0/local/lib/python"
      New: 
"/u/ggeorg/data/sync/software/python:/scratch/userdata/sage-6.0/local/lib/python"
    Found local metadata for sqlalchemy-0.5.8
    = SQLAlchemy =
    <BLANKLINE>
    == Description ==
    <BLANKLINE>
    SQLAlchemy is the Python SQL toolkit and Object Relational Mapper that 
gives application developers the full power and flexibility of SQL.
    <BLANKLINE>
    It provides a full suite of well known enterprise-level persistence 
patterns, designed for efficient and high-performing database access, 
adapted into a simple and Pythonic domain language.
    <BLANKLINE>
    Website: http://www.sqlalchemy.org/
    <BLANKLINE>
    == License ==
    <BLANKLINE>
    MIT
    <BLANKLINE>
    == SPKG Maintainers ==
    <BLANKLINE>
     * Mike Hansen
     * Mitesh Patel
    <BLANKLINE>
    == Upstream Contact ==
    <BLANKLINE>
     * http://www.sqlalchemy.org/community.html
    <BLANKLINE>
    == Dependencies ==
     * python
     * setuptools
    <BLANKLINE>
    == Build Notes ==
    <BLANKLINE>
    Use the standard sources. No changes from the official sources.
    <BLANKLINE>
    == Changelog ==
    <BLANKLINE>
    === SQLAlchemy-0.5.8.p0 (Mitesh Patel, March 4, 2010) ===
     * Upgrade to 0.5.8.
     * Tweak removal of previous versions.
     * Disable tests in spkg-check, since they now require nose.
    <BLANKLINE>
    === SQLAlchemy-0.4.6.p0 (Yi Qiang, June 25, 2008) ===
     * version bump
     * make sure to delete the old SQLAlchemy install directories (Michael 
Abshoff)
    <BLANKLINE>
    === SQLAlchemy-0.4.3.p1 (Michael Abshoff, March 14th, 2008) ===
     * add hg repo
     * add .hgignore
     * make sure SAGE_LOCAL is installed (#633)
     * use /usr/bin/env bash shebang (#1638)
    <BLANKLINE>
    === SQLAlchemy-0.4.3.p0 (Yi Qiang) ===
     * Initial version
    <BLANKLINE>
    <BLANKLINE>
**********************************************************************
1 item had failures:
   1 of 210 in sage.tests.cmdline.test_executable
    [209 tests, 1 failure, 76.12 s]



Georg


On Monday, January 20, 2014 10:41:08 PM UTC+1, Volker Braun wrote:
>
> Just to answer my own question, 
> src/sage/combinat/root_system/coxeter_group.py calls gap3 if it finds one 
> in the path. So there is the reason. It seems that Georg's gap3 install is 
> broken, which is outside of our control. As a workaround, remove 
> /usr/local64.hg/bin from the path before running Sage.
>
>
>
> On Monday, January 20, 2014 9:37:26 PM UTC, Volker Braun wrote:
>>
>> I'm willing to bet that gap3 is a shell script that 
>> runs gap-static-linux-i686 under the hood.
>>
>> The question is, who is calling gap3?
>>
>>
>>
>> On Monday, January 20, 2014 9:09:50 PM UTC, Simon King wrote:
>>>
>>> Also no surprise, since the local Sage-version of GAP is called gap and 
>>> not gap3. 
>>>
>>

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