Most errors turned out to be due to some optional packages having dependencies on stuff outside of sage, but not complaining about this during installation time. Only during runtime.
On Friday, 15 September 2017 21:34:25 UTC+2, Maarten Derickx wrote: > > Note that all tests pass on the same machine without optional packages. > > On Friday, 15 September 2017 21:33:43 UTC+2, Maarten Derickx wrote: >> >> The following tests fail on Ubuntu 16.04 with all optional packages except >> >> gmp igraph libtheora mpfrcx python_igraph >> >> installed. If any of these look familliar to you then links to existing >> tickets and or mailinglist discussions are highly appreciated. See also >> https://trac.sagemath.org/ticket/23871 and >> https://groups.google.com/forum/#!topic/sage-devel/oDJS-7R0qzE . >> >> sage -t --long --warn-long 46.3 >> local/lib/python2.7/site-packages/sagenb/notebook/cell.py # 1 doctest >> failed >> sage -t --long --warn-long 46.3 >> local/lib/python2.7/site-packages/sagenb/notebook/challenge.py # 1 doctest >> failed >> sage -t --long --warn-long 46.3 >> local/lib/python2.7/site-packages/sagenb/notebook/notebook.py # 1 doctest >> failed >> sage -t --long --warn-long 46.3 >> local/lib/python2.7/site-packages/sagenb/notebook/template.py # 1 doctest >> failed >> sage -t --long --warn-long 46.3 >> local/lib/python2.7/site-packages/sagenb/notebook/worksheet.py # 1 doctest >> failed >> sage -t --long --warn-long 46.3 src/doc/de/tutorial/interfaces.rst # 2 >> doctests failed >> sage -t --long --warn-long 46.3 src/doc/en/constructions/groups.rst # 1 >> doctest failed >> sage -t --long --warn-long 46.3 src/doc/en/tutorial/interfaces.rst # 2 >> doctests failed >> sage -t --long --warn-long 46.3 src/doc/fr/tutorial/interfaces.rst # 2 >> doctests failed >> sage -t --long --warn-long 46.3 src/doc/ja/tutorial/interfaces.rst # 2 >> doctests failed >> sage -t --long --warn-long 46.3 src/doc/pt/tutorial/interfaces.rst # 2 >> doctests failed >> sage -t --long --warn-long 46.3 src/doc/ru/tutorial/interfaces.rst # 2 >> doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/categories/finite_permutation_groups.py # 1 doctest failed >> sage -t --long --warn-long 46.3 src/sage/coding/code_bounds.py # 6 >> doctests failed >> sage -t --long --warn-long 46.3 src/sage/coding/databases.py # 4 >> doctests failed >> sage -t --long --warn-long 46.3 src/sage/coding/guava.py # 3 doctests >> failed >> sage -t --long --warn-long 46.3 src/sage/coding/linear_code.py # 12 >> doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/combinat/designs/block_design.py # 6 doctests failed >> sage -t --long --warn-long 46.3 src/sage/combinat/designs/database.py # >> 3 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/combinat/designs/design_catalog.py # 1 doctest failed >> sage -t --long --warn-long 46.3 >> src/sage/combinat/designs/incidence_structures.py # 7 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/combinat/integer_vectors_mod_permgroup.py # 2 doctests failed >> sage -t --long --warn-long 46.3 src/sage/combinat/sloane_functions.py # >> 2 doctests failed >> sage -t --long --warn-long 46.3 src/sage/ext/memory.pyx # 1 doctest >> failed >> sage -t --long --warn-long 46.3 >> src/sage/graphs/generators/classical_geometries.py # 6 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/graphs/generators/smallgraphs.py # 9 doctests failed >> sage -t --long --warn-long 46.3 src/sage/graphs/strongly_regular_db.pyx >> # 16 doctests failed >> sage -t --long --warn-long 46.3 src/sage/groups/generic.py # 6 doctests >> failed >> sage -t --long --warn-long 46.3 src/sage/groups/perm_gps/permgroup.py # >> 30 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/groups/perm_gps/permgroup_named.py # 50 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/manifolds/differentiable/affine_connection.py # 1 doctest failed >> sage -t --long --warn-long 46.3 >> src/sage/manifolds/differentiable/vectorfield.py # 1 doctest failed >> sage -t --long --warn-long 46.3 src/sage/parallel/decorate.py # 1 >> doctest failed >> sage -t --long --warn-long 46.3 >> src/sage/parallel/multiprocessing_sage.py # 1 doctest failed >> sage -t --long --warn-long 46.3 src/sage/repl/interpreter.py # 1 doctest >> failed >> sage -t --long --warn-long 46.3 src/sage/repl/ipython_tests.py # >> UserWarning in doctesting framework >> sage -t --long --warn-long 46.3 src/sage/rings/integer.pyx # 1 doctest >> failed >> sage -t --long --warn-long 46.3 >> src/sage/rings/number_field/galois_group.py # 2 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/rings/number_field/number_field.py # 3 doctests failed >> sage -t --long --warn-long 46.3 >> src/sage/rings/polynomial/polynomial_rational_flint.pyx # 4 doctests failed >> sage -t --long --warn-long 46.3 src/sage/tensor/modules/comp.py # 1 >> doctest failed >> sage -t --long --warn-long 46.3 src/sage/tests/cmdline.py # 9 doctests >> failed >> sage -t --long --warn-long 46.3 src/sage/tests/gap_packages.py # 1 >> doctest failed >> >> >> On Wednesday, 13 September 2017 16:35:17 UTC+2, Dima Pasechnik wrote: >>> >>> >>> >>> >>> >>> On Fedora 25 with gcc 6.4.1 ptestlong gives >>> >>> 1 item had failures: >>> 1 of 6 in sage.misc.temporary_file.graphics_filename >>> [64 tests, 1 failure, 1.04 s] >>> >>> sage -t --long --warn-long 57.3 src/sage/misc/temporary_file.py >>> ********************************************************************** >>> File "src/sage/misc/temporary_file.py", line 184, in >>> sage.misc.temporary_file.graphics_filename >>> Failed example: >>> fn.startswith(str(SAGE_TMP)) >>> Expected: >>> True >>> Got: >>> False >>> ********************************************************************** >>> 1 item had failures: >>> 1 of 6 in sage.misc.temporary_file.graphics_filename >>> [64 tests, 1 failure, 1.04 s] >>> >>> And also running this test separately gives this error. >>> >>> Dima >>> >>> On Monday, September 11, 2017 at 9:34:22 PM UTC+1, Volker Braun wrote: >>>> >>>> As always, you can get the latest beta version from the "develop" git >>>> branch. Alternatively, the self-contained source tarball is at >>>> http://www.sagemath.org/download-latest.html >>>> >>>> cbfb8fff53 (HEAD -> develop, tag: 8.1.beta5, trac/develop) Updated >>>> SageMath version to 8.1.beta5 >>>> 8f94ef27f6 (github/develop) Trac #23217: yasm testsuite fails >>>> 96cf713f3f Trac #23817: bridges method of Graph is sometimes wrong >>>> 75bac0f167 Trac #23808: Keep embedding info when converting algebraics >>>> to number field in projective morphism >>>> e179582199 Trac #23795: py3: remove two calls to cmp() >>>> 86ae9d8384 Trac #23794: py3 rich comparison for heegner (step 2/2) >>>> b435fee895 Trac #23792: python3: Fix import time assertion error from >>>> ntl_ZZ.__init__ >>>> b7ecad2525 Trac #23790: a few minor changes in docs >>>> 9933f5e37c Trac #23785: Fix sagelib setup.py install issues on Python 3 >>>> b635c9cac9 Trac #23780: Modify p-adic Gauss sum to allow working >>>> directly in Q_p >>>> 83f30494b7 Trac #23756: add shape method to crystal of tableaux elements >>>> 6248bc0dd2 Trac #23754: Randomized test for finite lattices >>>> a98fc524f0 Trac #23748: Run doctests with limited memory >>>> b99e6838da Trac #23724: Allow random sampling for unit testing >>>> 205c67ace1 Trac #23566: Jupyter does not plot matplotlib images when >>>> %display is set to 'typeset' or 'latex' >>>> b45ee2c5ca Trac #23135: Doctest: Conjugate does not distribute over a >>>> sum >>>> 1d0b209b81 Trac #22988: Add SBox Instances >>>> dda6635be0 Trac #22875: py3: operator has no longer div and idiv methods >>>> 90aa5a8bc6 Trac #22802: Symbolic to SymPy convertion for generic >>>> function >>>> 7de1a99ea7 Trac #22698: Deprecate sage --cython foo.spyx >>>> cdb9a12890 Trac #22558: .volume() of polyhedron does not handle >>>> unbounded polyhedron properly >>>> dcb5222e03 Trac #21973: Doctest: x.is_negative() when assuming x < 0 >>>> c7b2d40f60 Trac #21535: Make src/setup.py respect --build-base and >>>> --inplace, independent of SAGE_CYTHONIZED >>>> 99a0951303 Trac #20876: GLPK: glp_exact ignores verbosity level >>>> 1ee8224f5e Trac #15341: Hashing of GammaH congruence groups is broken >>>> 1120632619 Trac #11806: Optional spkg for MPFRCX >>>> 57a11a5d28 Trac #23789: Drop -std=gnu99 from $CC >>>> 58291f97f4 Trac #23637: failing doctest in >>>> sage/geometry/polyhedron/backend_normaliz.py (non-sorted) >>>> 5dfbce0c46 Trac #23596: Update GLPK to 4.63 >>>> 1df54ff532 Trac #23581: LLL_gram, clarifying and handling undefined >>>> behavior when `self` is not positive definite >>>> 46dfcd17dd Trac #23546: two errors in treewidth for non-connected graphs >>>> 361f517d69 Trac #23190: Improve is_injective()/is_surjective() for >>>> coercions of quotient rings >>>> 52425f5e7d Trac #22552: 2 bugs creating a simple 2-point Polytope >>>> f6f2427a30 Trac #20788: Compute dimensions of individual generalized >>>> eigenspaces >>>> 61229fc097 Trac #18619: A combinatorial formula for upper cluster >>>> algebra elements >>>> a5e1b9799f Trac #16045: Polytope volume function engines produce >>>> different results >>>> 50c6258e2e Trac #23784: p-adic Gamma function breaks on zero input >>>> 44fb4177ff Trac #23778: PermutationGroup.cardinality is sometimes an int >>>> 8ffde25927 Trac #23776: arctan2 for RDF causes plotting errors >>>> 89bc194c5d Trac #23774: sage_setup: Proper error checking for makedirs >>>> b7cfd88fcc Trac #23771: Fix "functions should not be declared inline" >>>> Cython warnings >>>> 2327f80010 Trac #23767: 3 test failures with -optional=sage,latex >>>> 7c5927c9db Trac #23763: turning free dendriform algebras into Hopf >>>> algebras >>>> b7f7f57e7d Trac #23761: Add QQ to the category of number fields >>>> d02a1c52d7 Trac #23751: py3: no more cmp in ideal_monoid.py >>>> 843e294d2c Trac #23745: py3 : some future imports in pyx files >>>> 6dce571596 Trac #23744: Don't use SAGE_CYTHONIZED in >>>> sage_include_directories(sources=True) >>>> ecfb4f9cee Trac #23743: inaccuracy in SR.var docstring >>>> fa753426bd Trac #23735: insert link to faqs 0^0 and show docstring of >>>> __pow__ in integer >>>> 91c6d0da9f Trac #23731: py3: future division in matrix2 >>>> fd1e9b4baa Trac #23729: py3: some care for division in graphs + various >>>> improvements >>>> b480562945 Trac #23711: sage-env: do not depend on matplotlib version >>>> number >>>> 913ce95ad1 Trac #23692: Implement crystals for Kac modules for >>>> general-linear Lie superalgebras >>>> e4204f8be2 Trac #23681: Make _repr_ of MILP more informative >>>> 329e970dfb Trac #23496: sympy patch for abstract function >>>> b9003e5b05 Trac #23326: Polyhedron from inexact MIP is broken >>>> 5fdf5a3a5d Trac #23275: Bipartite graphs should not accept loops >>>> f34394d84e (tag: 8.1.beta4) Updated SageMath version to 8.1.beta4 >>>> >>>> -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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