On Wed, 16 May 2018, 16:26 Erik Bray, <erik.m.b...@gmail.com> wrote:
> On Wed, May 16, 2018 at 9:56 AM, John Cremona <john.crem...@gmail.com>
> wrote:
> > I started to build this yesterday after pulling from trac into a place
> where
> > beta0 had already built OK. This morning I find the lines
> >
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> > [scipy-0.19.1] Skipping scipy as it is not installed.
> >
> > being repeated for ever. I have left that going in case someone wants to
> > see any log files.
>
> I'm not sure, but I think this might be pip-related. I think Jeroen
> mentioned something about this to me a couple weeks ago. Is it
> possible you upgraded the pip in your Sage install?
>
>
Yes I did! I had installed some stuff needed for LMFDB using sage -i pip
> instal ... and it told me my pip was not the most recent and should be
> upgraded, so I did.
>
What should I do?
>
>
>
>
> > On 16 May 2018 at 08:44, Henri Girard <henri.gir...@gmail.com> wrote:
> >>
> >> Bionic 18.04 AMD x8 64 bits, compile perfect. I started from fresh git
> >> sage because upgrading from 8.2 failed. It couldn't find many libs. By
> the
> >> way I found my crash problem while compiling : I had to config the bios
> >> allowing warmer processing.
> >>
> >>
> >> Le 15/05/2018 à 21:24, Sébastien Labbé a écrit :
> >>
> >> On Ubuntu 16.04, the command `./sage -t -p --all --long
> >> --optional=sage,optional,external` finishes with:
> >>
> >> ----------------------------------------------------------------------
> >> sage -t --long src/sage/coding/code_constructions.py # 1 doctest failed
> >> ----------------------------------------------------------------------
> >> Total time for all tests: 1821.3 seconds
> >> cpu time: 11639.5 seconds
> >> cumulative wall time: 14059.4 seconds
> >> External software detected for doctesting: gurobi,latex
> >> Traceback (most recent call last):
> >> File "/home/slabbe/GitBox/sage/src/bin/sage-runtests", line 127, in
> >> <module>
> >> err = DC.run()
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
> >> line 1176, in run
> >> + ','.join(available_software.seen()))
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
> >> line 583, in log
> >> self.logger.write(s + end)
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/control.py",
> >> line 250, in write
> >> f.write(x)
> >> ValueError: I/O operation on closed file
> >>
> >>
> >> The code_construction error is copied below (I can not reproduce it) :
> >>
> >>
> >>
> >> sage -t --long src/sage/coding/code_constructions.py
> >> **********************************************************************
> >> File "src/sage/coding/code_constructions.py", line 624, in
> >> sage.coding.code_constructions.QuadraticResidueCodeOddPair
> >> Failed example:
> >> codes.QuadraticResidueCodeOddPair(17, GF(13))
> >> Exception raised:
> >> Traceback (most recent call last):
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
> >> line 562, in _run
> >> self.compile_and_execute(example, compiler, test.globs)
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/doctest/forker.py",
> >> line 972, in compile_and_execute
> >> exec(compiled, globs)
> >> File "<doctest
> >> sage.coding.code_constructions.QuadraticResidueCodeOddPair[0]>", line
> 1, in
> >> <module>
> >> codes.QuadraticResidueCodeOddPair(Integer(17), GF(Integer(13)))
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
> >> line 666, in Quadratic
> >> ResidueCodeOddPair
> >> return DuadicCodeOddPair(F,Q,N)
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/coding/code_constructions.py",
> >> line 425, in DuadicCod
> >> eOddPair
> >> gg1 = P2(coeffs1)
> >> File "sage/structure/parent.pyx", line 920, in
> >> sage.structure.parent.Parent.__call__
> (build/cythonized/sage/structure/paren
> >> t.c:9734)
> >> return mor._call_(x)
> >> File "sage/structure/coerce_maps.pyx", line 145, in
> >> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
> >> nized/sage/structure/coerce_maps.c:4555)
> >> raise
> >> File "sage/structure/coerce_maps.pyx", line 140, in
> >> sage.structure.coerce_maps.DefaultConvertMap_unique._call_ (build/cytho
> >> nized/sage/structure/coerce_maps.c:4423)
> >> return C._element_constructor(x)
> >> File
> >>
> "/home/slabbe/GitBox/sage/local/lib/python2.7/site-packages/sage/rings/polynomial/polynomial_ring.py",
> >> line 404, in _e
> >> lement_constructor_
> >> return C(self, x, check=check, is_gen=False,
> construct=construct)
> >> File "sage/rings/polynomial/polynomial_zmod_flint.pyx", line 100,
> in
> >> sage.rings.polynomial.polynomial_zmod_flint.Polynomial
> >> _zmod_flint.__init__
> >> (build/cythonized/sage/rings/polynomial/polynomial_zmod_flint.cpp:14358)
> >> lst = [k(i) for i in x]
> >> File "sage/structure/parent.pyx", line 920, in
> >> sage.structure.parent.Parent.__call__
> (build/cythonized/sage/structure/paren
> >> t.c:9734)
> >> return mor._call_(x)
> >> File "sage/rings/finite_rings/hom_prime_finite_field.pyx", line
> 46,
> >> in sage.rings.finite_rings.hom_prime_finite_field.Secti
> >> onFiniteFieldHomomorphism_prime._call_
> >> (build/cythonized/sage/rings/finite_rings/hom_prime_finite_field.c:3457)
> >> raise ValueError("%s is not in the image of %s" % (x,
> >> self._inverse))
> >> ValueError: 3*z^3 + 2*z^2 + 8*z + 1 is not in the image of (map
> >> internal to coercion system -- copy before use)
> >> Ring morphism:
> >> From: Finite Field of size 13
> >> To: Finite Field in z of size 13^4
> >> **********************************************************************
> >> 1 item had failures:
> >> 1 of 13 in
> sage.coding.code_constructions.QuadraticResidueCodeOddPair
> >> [146 tests, 1 failure, 2.56 s]
> >>
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