Sun 2019-03-24 00:41 UTC, Volker Braun:
>
> The "master" git branch has been updated to Sage-8.7.
On Debian 9.8 ("stretch"), from a fresh git clone, building
python2-based SageMath with as many optional and experimental
packages as I could install gives the following:
- "make": success
- "make doc-pdf": fails on "de/a_tour_of_sage":
! Package babel Error: You haven't specified a language option.
- "make ptestlong":
- one transient timeout in src/sage/parallel/map_reduce.py
- src/sage/parallel/map_reduce.py # Timed out
(passes when later running "./sage -t --long --warn-long" on this file)
- one transient failure related to optional package giacpy_sage
- src/sage/rings/polynomial/multi_polynomial_ideal.py # 1 doctest failed
(passes when later running "./sage -t --long --warn-long" on this file)
- one permanent failure involving p_group_cohomology and Singular's
dickson.lib
- src/sage/tests/modular_group_cohomology.py # 14 doctests failed
(reproduced when later running "./sage -t --long --warn-long" on
this file;
the key seems to be the Singular error "cannot open dickson.lib")
Do others observe the failure with "make doc-pdf" on "de/a_tour_of_sage"?
Or should I check the babel package in my LaTeX installation?
Regarding the transient timeout in map_reduce (can provide details on demand)
and the transient failure in multi_polynomial_ideal.py related to giacpy_sage
(details follow), I'll keep an eye on them and in case they occur again I'll
check for an existing ticket or I'll open one.
Regarding the failures in src/sage/tests/modular_group_cohomology.py
related to the optional package p_group_cohomology (details follow),
can others confirm? Is there a fix? Should I install extra libraries
for Singular? What is the proper way to uninstall the optional package
p_group_cohomology if I need an installation that passes all tests
(say, to run a patchbot)?
Following are some extra details regarding the configuration and the tests.
-----
$ lsb_release -a
No LSB modules are available.
Distributor ID: Debian
Description: Debian GNU/Linux 9.8 (stretch)
Release: 9.8
Codename: stretch
$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Debian
6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs
--enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++
--prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu-
--enable-shared --enable-linker-build-id --libexecdir=/usr/lib
--without-included-gettext --enable-threads=posix --libdir=/usr/lib
--enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--with-default-libstdcxx-abi=new --enable-gnu-unique-object
--disable-vtable-verify --enable-libmpx --enable-plugin
--enable-default-pie --with-system-zlib --disable-browser-plugin
--enable-java-awt=gtk --enable-gtk-cairo
--with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre
--enable-java-home
--with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64
--with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64
--with-arch-directory=amd64
--with-ecj-jar=/usr/share/java/eclipse-ecj.jar
--with-target-system-zlib --enable-objc-gc=auto --enable-multiarch
--with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32
--enable-multilib --with-tune=generic --enable-checking=release
--build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1)
$ make
...
Sage build/upgrade complete!
$ make doc-pdf
...
Building de/a_tour_of_sage.
[a_tour_of] loading pickled environment... not yet created
[a_tour_of] building [latex]: all documents
[a_tour_of] updating environment: 1 added, 0 changed, 0 removed
[a_tour_of] Merging environment/index files...
[a_tour_of] ... done (0 todos, 1 index, 0 citations, 0 modules)
[a_tour_of] processing a_tour_of_sage.tex...index
[a_tour_of] resolving references...
[a_tour_of] writing... done
[a_tour_of] copying TeX support files...
[a_tour_of] done
[a_tour_of] The LaTeX files are in local/share/doc/sage/latex/de/a_tour_of_sage.
[a_tour_of] Run 'make' in that directory to run these through (pdf)latex
[a_tour_of] (use `make latexpdf' here to do that automatically).
LaTeX file written to
/home/lelievre/s/sage2p/local/share/doc/sage/latex/de/a_tour_of_sage
make[2]: Entering directory
'/home/lelievre/s/sage2p/local/share/doc/sage/latex/de/a_tour_of_sage'
latexmk -pdf -dvi- -ps- 'a_tour_of_sage.tex'
Latexmk: This is Latexmk, John Collins, 1 January 2015, version: 4.41.
Rule 'pdflatex': Rules & subrules not known to be previously run:
pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex -recorder "a_tour_of_sage.tex"'
------------
Latexmk: applying rule 'pdflatex'...
This is pdfTeX, Version 3.14159265-2.6-1.40.17 (TeX Live 2016/Debian)
(preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./a_tour_of_sage.tex
LaTeX2e <2017/01/01> patch level 3
Babel <3.9r> and hyphenation patterns for 3 language(s) loaded.
(./sphinxmanual.cls
Document Class: sphinxmanual 2017/03/26 v1.6 Document class (Sphinx manual)
(/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
Document Class: report 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)))
(/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/ot1enc.dfu)
(/usr/share/texlive/texmf-dist/tex/latex/base/omsenc.dfu)))
(/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty)
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<<t1.cmap>>)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty))
(/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty
! Package babel Error: You haven't specified a language option.
See the babel package documentation for explanation.
Type H <return> for immediate help.
...
l.343 ...ry to proceed from here, type x to quit.}
?
! Emergency stop.
...
l.343 ...ry to proceed from here, type x to quit.}
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on a_tour_of_sage.log.
Collected error summary (may duplicate other messages):
pdflatex: Command for 'pdflatex' gave return code 256
Latexmk: Use the -f option to force complete processing,
unless error was exceeding maximum runs of latex/pdflatex.
Latexmk: Errors, so I did not complete making targets
Makefile:33: recipe for target 'a_tour_of_sage.pdf' failed
make[2]: *** [a_tour_of_sage.pdf] Error 12
make[2]: Leaving directory
'/home/lelievre/s/sage2p/local/share/doc/sage/latex/de/a_tour_of_sage'
Error building the documentation.
Traceback (most recent call last):
File "/home/lelievre/s/sage2p/local/lib/python2.7/runpy.py", line
174, in _run_module_as_main
"__main__", fname, loader, pkg_name)
File "/home/lelievre/s/sage2p/local/lib/python2.7/runpy.py", line
72, in _run_code
exec code in run_globals
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage_setup/docbuild/__main__.py",
line 2, in <module>
main()
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py",
line 1732, in main
builder()
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py",
line 362, in _wrapper
build_many(build_other_doc, L)
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py",
line 291, in build_many
ret = x.get(99999)
File "/home/lelievre/s/sage2p/local/lib/python2.7/multiprocessing/pool.py",
line 572, in get
raise self._value
RuntimeError: failed to run $MAKE all-pdf in
/home/lelievre/s/sage2p/local/share/doc/sage/latex/de/a_tour_of_sage
$ make ptestlong
...
sage -t --long --warn-long 51.8
src/sage/rings/polynomial/multi_polynomial_ideal.py # 1 doctest
failed
sage -t --long --warn-long 51.8
src/sage/tests/modular_group_cohomology.py # 14 doctests failed
sage -t --long --warn-long 51.8 src/sage/parallel/map_reduce.py # Timed out
The failing doctest in src/sage/rings/polynomial/multi_polynomial_ideal.py was:
sage -t --long --warn-long 51.8
src/sage/rings/polynomial/multi_polynomial_ideal.py
**********************************************************************
File "src/sage/rings/polynomial/multi_polynomial_ideal.py", line 2002,
in sage.rings.polynomial.multi_polynomial_ideal.?.elimination_ideal
Failed example:
I.elimination_ideal([t, s], algorithm="giac") == J # optional - giacpy_sage
Exception raised:
Traceback (most recent call last):
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 671, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 1095, in compile_and_execute
exec(compiled, globs)
File "<doctest
sage.rings.polynomial.multi_polynomial_ideal.?.elimination_ideal[3]>",
line 1, in <module>
I.elimination_ideal([t, s], algorithm="giac") == J # optional
- giacpy_sage
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/rings/polynomial/multi_polynomial_ideal.py",
line 2029, in elimination_ideal
self, elim_variables=variables, *args, **kwds).ideal()
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/libs/giac.py",
line 126, in wrapper
return func(*args, **kwds)
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/libs/giac.py",
line 370, in groebner_basis
gb_giac = F.eliminate(list(elim_variables))
File "giacpy_sage.pyx", line 3025, in giacpy_sage.Pygen.eliminate
File "giacpy_sage.pyx", line 6355, in giacpy_sage.GiacFunction.__call__
RuntimeError: Aborted
**********************************************************************
1 item had failures:
1 of 5 in sage.rings.polynomial.multi_polynomial_ideal.?.elimination_ideal
[758 tests, 1 failure, 14.53 s]
The failing doctests in src/sage/tests/modular_group_cohomology.py started with:
sage -t --long --warn-long 51.8 src/sage/tests/modular_group_cohomology.py
**********************************************************************
File "src/sage/tests/modular_group_cohomology.py", line 16, in
sage.tests.modular_group_cohomology
Failed example:
H = CohomologyRing(64,14,from_scratch=True) # optional -
p_group_cohomology
Exception raised:
Traceback (most recent call last):
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 671, in _run
self.compile_and_execute(example, compiler, test.globs)
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 1095, in compile_and_execute
exec(compiled, globs)
File "<doctest sage.tests.modular_group_cohomology[2]>", line 1,
in <module>
H = CohomologyRing(Integer(64),Integer(14),from_scratch=True)
# optional - p_group_cohomology
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/pGroupCohomology/factory.py",
line 1539, in __call__
OUT = self._check_compatibility(CacheKey,
self._get_p_group_from_cache_or_db(GStem, KEY, **extras) or
self._get_p_group_from_scratch(KEY, q, GStem, GroupName, **extras))
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/pGroupCohomology/factory.py",
line 1252, in _get_p_group_from_scratch
OUT = COHO(KEY[0],KEY[1], **extras)
File "pGroupCohomology/cohomology.pyx", line 3033, in
pGroupCohomology.cohomology.COHO.__init__
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/interfaces/singular.py",
line 861, in lib
self.eval('LIB "%s"'%lib)
File
"/home/lelievre/s/sage2p/local/lib/python2.7/site-packages/sage/interfaces/singular.py",
line 658, in eval
raise SingularError('Singular error:\n%s'%s)
SingularError: Singular error:
? cannot open dickson.lib
? error occurred in or before STDIN line 15: `LIB "dickson.lib";`
Retesting manually:
$ ./sage -t --long --warn-long 51.8
src/sage/rings/polynomial/multi_polynomial_ideal.py
...
All tests passed!
$ ./sage -t --long --warn-long 51.8 src/sage/parallel/map_reduce.py
...
All tests passed!
$ ./sage -t --long --warn-long 51.8 src/sage/tests/modular_group_cohomology.py
...
----------------------------------------------------------------------
sage -t --long --warn-long 51.8
src/sage/tests/modular_group_cohomology.py # 14 doctests failed
----------------------------------------------------------------------
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