You have something in ~/.gap. See 
https://trac.sagemath.org/ticket/27681#comment:30

> On 25/05/2019, at 12:02 PM, Steven Trogdon <[email protected]> wrote:
> 
> As far as I know this failure started with this beta.
> 
> sage -t --long src/sage/tests/gap_packages.py
> **********************************************************************
> File "src/sage/tests/gap_packages.py", line 137, in 
> sage.tests.gap_packages.all_installed_packages
> Failed example:
>     all_installed_packages() == all_installed_packages(gap=gap)
> Expected:
>     True
> Got:
>     False
> **********************************************************************
> 1 item had failures:
>    1 of   4 in sage.tests.gap_packages.all_installed_packages
>     [10 tests, 1 failure, 1.04 s]
> 
> 
> For info:
> 
> sage: from sage.tests.gap_packages import all_installed_packages
> sage: all_installed_packages()
> ('AtlasRep',
>  'FactInt',
>  'GAPDoc',
>  'SmallGrp',
>  'alnuth',
>  'atlasrep',
>  'autpgrp',
>  'crisp',
>  'ctbllib',
>  'fga',
>  'irredsol',
>  'laguna',
>  'polenta',
>  'polycyclic',
>  'primgrp',
>  'resclasses',
>  'sophus',
>  'tomlib',
>  'transgrp')
> sage: all_installed_packages(gap=gap)
> ('FactInt',
>  'GAPDoc',
>  'SmallGrp',
>  'alnuth',
>  'atlasrep',
>  'autpgrp',
>  'crisp',
>  'ctbllib',
>  'fga',
>  'irredsol',
>  'laguna',
>  'polenta',
>  'polycyclic',
>  'primgrp',
>  'resclasses',
>  'sophus',
>  'tomlib',
>  'transgrp')
> 
> ls ~/.gap/pkg/
> AtlasRep
> 
> 
> 
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