On Tue, Dec 31, 2019 at 11:32 PM Dima Pasechnik <[email protected]> wrote:
>
> On Tue, Dec 31, 2019 at 11:23 PM Frédéric Chapoton <[email protected]> 
> wrote:
> >
> > So what would be a practical solution in my case ?
> >
>
on a developent box (thsi won't do for buildbots etc, naturally)
 you can pull
https://trac.sagemath.org/ticket/28884

install libopenblas-dev and whatever R packages are needed from Ubuntu

run

make openblas-clean
./bootstrap && ./configure

and check that R won't be installed, and run

make

(and live happily ever after with R and openblas provided by the system)


> upgrade gfortran to a fixed version
> (see https://gcc.gnu.org/bugzilla/show_bug.cgi?id=90329)
>
> perharps your Ubuntu version has a fix...
>
> or downgrade to gfortran6
>
> > Le mardi 31 décembre 2019 16:18:34 UTC+1, Dima Pasechnik a écrit :
> >>
> >> It's probably
> >> https://developer.r-project.org/Blog/public/2019/05/15/gfortran-issues-with-lapack/index.html
> >> - and you have a slightly broken "new" gfortran...
> >>
> >> Sorry for barking up the wrong tree.
> >>
> >> IMHO, we should just use
> >> https://trac.sagemath.org/ticket/27870 and
> >> https://trac.sagemath.org/ticket/28884
> >> and do not try to solve already solved issues yet again.
> >>
> >>
> >> On Tue, Dec 31, 2019 at 11:02 PM Frédéric Chapoton <[email protected]> 
> >> wrote:
> >> >
> >> > After 'sage -f openblas", I am back at the previous situation : I have 
> >> > the three files blas.pc etc again in local/lib/pkgconfig. Building R 
> >> > still fails in the same way.
> >> >
> >> > F
> >> >
> >> > Le mardi 31 décembre 2019 12:14:15 UTC+1, Frédéric Chapoton a écrit :
> >> >>
> >> >> I have launched "sage -f openblas", and this is re-building many 
> >> >> things. Now building giac, so probably succedeed in building openblas.
> >> >>
> >> >> F
> >> >>
> >> >> Le mardi 31 décembre 2019 12:08:48 UTC+1, Dima Pasechnik a écrit :
> >> >>>
> >> >>> have you built openblas successfully?
> >> >>>
> >> >>> On Tue, 31 Dec 2019, 18:52 Frédéric Chapoton, <[email protected]> 
> >> >>> wrote:
> >> >>>>
> >> >>>> I had three files there : blas.pc, cblas.pc and openblas.pc. Removing 
> >> >>>> them, and then ./configure, and then make build : same problem, 
> >> >>>> unchanged.
> >> >>>>
> >> >>>> F
> >> >>>>
> >> >>>> Le mardi 31 décembre 2019 11:36:21 UTC+1, Dima Pasechnik a écrit :
> >> >>>>>
> >> >>>>> you might have remains of unmerged tickets with spkg-configure for 
> >> >>>>> openblas etc. Check that you don't have links to *blas.pc files in 
> >> >>>>> local/lib/pkgconfig/
> >> >>>>>
> >> >>>>> On Tue, 31 Dec 2019, 18:13 Frédéric Chapoton, <[email protected]> 
> >> >>>>> wrote:
> >> >>>>>>
> >> >>>>>> Welcome to Ubuntu 18.04.3 LTS (GNU/Linux 4.15.0-70-generic x86_64)
> >> >>>>>>
> >> >>>>>> This fails in the same way, even after I installed libblas-dev.
> >> >>>>>>
> >> >>>>>> F
> >> >>>>>>
> >> >>>>>> Le mardi 31 décembre 2019 10:41:31 UTC+1, Eric Gourgoulhon a écrit :
> >> >>>>>>>
> >> >>>>>>> Le mardi 31 décembre 2019 09:40:06 UTC+1, Frédéric Chapoton a 
> >> >>>>>>> écrit :
> >> >>>>>>>>
> >> >>>>>>>> I have problems when building R 3.6.2 on my (usually rather 
> >> >>>>>>>> stable) Ubuntu patchbot.
> >> >>>>>>>
> >> >>>>>>>
> >> >>>>>>> Which version of Ubuntu? I could build R 3.6.2 without any trouble 
> >> >>>>>>> on Ubuntu 18.04, with the system BLAS (i.e. the Ubuntu package 
> >> >>>>>>> libblas-dev is installed on my system).
> >> >>>>>>>
> >> >>>>>>> Best wishes,
> >> >>>>>>>
> >> >>>>>>> Eric.
> >> >>>>>>
> >> >>>>>> --
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