is it a rebuild after make distclean
? Sage now is trying to use openblas and several packages, such as R and gsl, installed on the system On Thu, 23 Jan 2020, 09:01 Harald Schilly, <[email protected]> wrote: > Building it for CoCalc (ubuntu 18.04 docker container) it fails at SciPy. > Can't find any of the required libs. There was no change in the setup, > hence I wonder what's going on... I'm happy to check various env vars! > > [scipy-1.2.0] Running from scipy source directory. > > [scipy-1.2.0] lapack_opt_info: > [scipy-1.2.0] lapack_mkl_info: > > [scipy-1.2.0] Disabled lapack_mkl_info: (MKLROOT is None) > [scipy-1.2.0] Disabled lapack_mkl_info: (MKLROOT is None) > > [scipy-1.2.0] customize UnixCCompiler > [scipy-1.2.0] libraries mkl_rt not found in [] > > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] openblas_lapack_info: > [scipy-1.2.0] customize UnixCCompiler > [scipy-1.2.0] Disabled openblas_lapack_info: (OPENBLAS is None) > [scipy-1.2.0] customize UnixCCompiler > [scipy-1.2.0] libraries openblas not found in [] > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] openblas_clapack_info: > [scipy-1.2.0] customize UnixCCompiler > [scipy-1.2.0] Disabled openblas_clapack_info: (OPENBLAS is None) > [scipy-1.2.0] customize UnixCCompiler > [scipy-1.2.0] libraries openblas,lapack not found in [] > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] atlas_3_10_threads_info: > [scipy-1.2.0] Disabled atlas_3_10_threads_info: (PTATLAS is None) > [scipy-1.2.0] <class > 'numpy.distutils.system_info.atlas_3_10_threads_info'> > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] atlas_3_10_info: > [scipy-1.2.0] Disabled atlas_3_10_info: (ATLAS is None) > [scipy-1.2.0] <class 'numpy.distutils.system_info.atlas_3_10_info'> > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] atlas_threads_info: > [scipy-1.2.0] Disabled atlas_threads_info: (PTATLAS is None) > [scipy-1.2.0] <class 'numpy.distutils.system_info.atlas_threads_info'> > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] atlas_info: > [scipy-1.2.0] Disabled atlas_info: (ATLAS is None) > [scipy-1.2.0] <class 'numpy.distutils.system_info.atlas_info'> > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] accelerate_info: > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] /ext/sage/sage-dev/local/lib/python3.7/site-packages/ > numpy/distutils/system_info.py:636: UserWarning: > [scipy-1.2.0] Atlas (http://math-atlas.sourceforge.net/) > libraries not found. > [scipy-1.2.0] Directories to search for the libraries can be > specified in the > [scipy-1.2.0] numpy/distutils/site.cfg file (section [atlas]) or > by setting > [scipy-1.2.0] the ATLAS environment variable. > [scipy-1.2.0] self.calc_info() > [scipy-1.2.0] lapack_info: > [scipy-1.2.0] customize UnixCCompiler > [scipy-1.2.0] libraries openblas not found in [ > '/ext/sage/sage-dev/local/lib'] > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] /ext/sage/sage-dev/local/lib/python3.7/site-packages/ > numpy/distutils/system_info.py:636: UserWarning: > [scipy-1.2.0] Lapack (http://www.netlib.org/lapack/) libraries > not found. > [scipy-1.2.0] Directories to search for the libraries can be > specified in the > [scipy-1.2.0] numpy/distutils/site.cfg file (section [lapack]) or > by setting > [scipy-1.2.0] the LAPACK environment variable. > [scipy-1.2.0] self.calc_info() > [scipy-1.2.0] lapack_src_info: > [scipy-1.2.0] NOT AVAILABLE > [scipy-1.2.0] > [scipy-1.2.0] /ext/sage/sage-dev/local/lib/python3.7/site-packages/ > numpy/distutils/system_info.py:636: UserWarning: > [scipy-1.2.0] Lapack (http://www.netlib.org/lapack/) sources not > found. > [scipy-1.2.0] Directories to search for the sources can be > specified in the > [scipy-1.2.0] numpy/distutils/site.cfg file (section [lapack_src]) > or by setting > [scipy-1.2.0] the LAPACK_SRC environment variable. > [scipy-1.2.0] self.calc_info() > [scipy-1.2.0] NOT AVAILABLE > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/3cffdf1a-ae49-4621-8697-2c15dff11f46%40googlegroups.com > <https://groups.google.com/d/msgid/sage-release/3cffdf1a-ae49-4621-8697-2c15dff11f46%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CAAWYfq3DNECK7MsPYivbvX6xjzekBrCc%2B7o-b1VXuyEJe7wsLA%40mail.gmail.com.
