I tried ./sage -f mcqd but it’s not enough :(
[sagelib-9.1.beta4] fi [sagelib-9.1.beta4] make[2]: Leaving directory '/home/dcoudert/sage/src' [sagelib-9.1.beta4] [sagelib-9.1.beta4] real 0m5.095s [sagelib-9.1.beta4] user 0m4.396s [sagelib-9.1.beta4] sys 0m0.584s cp /home/dcoudert/sage/src/bin/sage-env-config /home/dcoudert/sage/local/bin/sage-env-config sage-logger -p 'sage-spkg mcqd-1.0.p0' '/home/dcoudert/sage/logs/pkgs/mcqd-1.0.p0.log' [mcqd-1.0.p0] Found local metadata for mcqd-1.0.p0 [mcqd-1.0.p0] Using cached file /home/dcoudert/sage/upstream/mcqd-1.0.tar.bz2 [mcqd-1.0.p0] mcqd-1.0.p0 [mcqd-1.0.p0] ==================================================== [mcqd-1.0.p0] Setting up build directory for mcqd-1.0.p0 [mcqd-1.0.p0] Finished extraction [mcqd-1.0.p0] No patch files found in ../patches [mcqd-1.0.p0] **************************************************** [mcqd-1.0.p0] Host system: [mcqd-1.0.p0] Linux musclotte 4.17.6-200.fc28.x86_64 #1 SMP Wed Jul 11 20:29:01 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux [mcqd-1.0.p0] **************************************************** [mcqd-1.0.p0] C compiler: gcc [mcqd-1.0.p0] C compiler version: [mcqd-1.0.p0] Using built-in specs. [mcqd-1.0.p0] COLLECT_GCC=/usr/bin/gcc [mcqd-1.0.p0] COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper [mcqd-1.0.p0] OFFLOAD_TARGET_NAMES=nvptx-none [mcqd-1.0.p0] OFFLOAD_TARGET_DEFAULT=1 [mcqd-1.0.p0] Target: x86_64-redhat-linux [mcqd-1.0.p0] Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --enable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux [mcqd-1.0.p0] Thread model: posix [mcqd-1.0.p0] gcc version 8.1.1 20180712 (Red Hat 8.1.1-5) (GCC) [mcqd-1.0.p0] **************************************************** [mcqd-1.0.p0] Package 'mcqd' is currently not installed [mcqd-1.0.p0] No legacy uninstaller found for 'mcqd'; nothing to do [mcqd-1.0.p0] /usr/bin/ld: mcqd.o: relocation R_X86_64_32 against `.rodata' can not be used when making a shared object; recompile with -fPIC [mcqd-1.0.p0] /usr/bin/ld: final link failed: Nonrepresentable section on output [mcqd-1.0.p0] collect2: error: ld returned 1 exit status [mcqd-1.0.p0] *********************************************************************************************************************************************************************************** [mcqd-1.0.p0] Error: source file/directory libmcqd.so does not exist [mcqd-1.0.p0] *********************************************************************************************************************************************************************************** [mcqd-1.0.p0] [mcqd-1.0.p0] real 0m0.386s [mcqd-1.0.p0] user 0m0.139s [mcqd-1.0.p0] sys 0m0.056s [mcqd-1.0.p0] ************************************************************************ [mcqd-1.0.p0] Error installing package mcqd-1.0.p0 [mcqd-1.0.p0] ************************************************************************ [mcqd-1.0.p0] Please email sage-devel (http://groups.google.com/group/sage-devel) [mcqd-1.0.p0] explaining the problem and including the log file [mcqd-1.0.p0] /home/dcoudert/sage/logs/pkgs/mcqd-1.0.p0.log [mcqd-1.0.p0] Describe your computer, operating system, etc. [mcqd-1.0.p0] If you want to try to fix the problem yourself, *don't* just cd to [mcqd-1.0.p0] /home/dcoudert/sage/local/var/tmp/sage/build/mcqd-1.0.p0 and type 'make' or whatever is appropriate. [mcqd-1.0.p0] Instead, the following commands setup all environment variables [mcqd-1.0.p0] correctly and load a subshell for you to debug the error: [mcqd-1.0.p0] (cd '/home/dcoudert/sage/local/var/tmp/sage/build/mcqd-1.0.p0' && '/home/dcoudert/sage/sage' --sh) [mcqd-1.0.p0] When you are done debugging, you can type "exit" to leave the subshell. [mcqd-1.0.p0] ************************************************************************ make[1]: *** [Makefile:2201: /home/dcoudert/sage/local/var/lib/sage/installed/mcqd-1.0.p0] Error 1 make[1]: Leaving directory '/home/dcoudert/sage/build/make' real 0m6.293s user 0m5.092s sys 0m0.877s *************************************************************** Error building Sage. The following package(s) may have failed to build (not necessarily during this run of 'make mcqd'): * package: mcqd-1.0.p0 last build time: Feb 14 15:06 log file: /home/dcoudert/sage/logs/pkgs/mcqd-1.0.p0.log build directory: /home/dcoudert/sage/local/var/tmp/sage/build/mcqd-1.0.p0 It is safe to delete any log files and build directories, but they contain information that is helpful for debugging build problems. WARNING: If you now run 'make' again, the build directory of the same version of the package will, by default, be deleted. Set the environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. make: *** [Makefile:33: mcqd] Error 1 > Le 14 févr. 2020 à 14:46, Dima Pasechnik <[email protected]> a écrit : > > how about > > ./sage -f mcqd > > > On Fri, Feb 14, 2020 at 1:08 PM David Coudert <[email protected]> wrote: >> >> incremental build from 9.1.beta3 failed on mccd on a linux fedora 28 >> computer. >> Don’t know what to do (and hope to avoid distclean). >> Let me know if more informations is needed. >> Best, >> David. >> >> …. >> [rpy2-2.8.2.p1] user 0m6.064s >> [rpy2-2.8.2.p1] sys 0m1.100s >> [rpy2-2.8.2.p1] Copying package files from temporary location >> /home/dcoudert/sage/local/var/tmp/sage/build/rpy2-2.8.2.p1/inst to >> /home/dcoudert/sage/local >> [rpy2-2.8.2.p1] Successfully installed rpy2-2.8.2.p1 >> [rpy2-2.8.2.p1] Deleting temporary build directory >> [rpy2-2.8.2.p1] /home/dcoudert/sage/local/var/tmp/sage/build/rpy2-2.8.2.p1 >> [rpy2-2.8.2.p1] Finished installing rpy2-2.8.2.p1.spkg >> cp /home/dcoudert/sage/src/bin/sage-env-config >> /home/dcoudert/sage/local/bin/sage-env-config >> cp /home/dcoudert/sage/src/bin/sage-valgrind >> /home/dcoudert/sage/local/bin/sage-valgrind >> cp /home/dcoudert/sage/src/bin/sage-version.sh >> /home/dcoudert/sage/local/bin/sage-version.sh >> sage-logger -p 'sage-spkg mcqd-1.0.p0' >> '/home/dcoudert/sage/logs/pkgs/mcqd-1.0.p0.log' >> [mcqd-1.0.p0] Found local metadata for mcqd-1.0.p0 >> [mcqd-1.0.p0] Using cached file /home/dcoudert/sage/upstream/mcqd-1.0.tar.bz2 >> [mcqd-1.0.p0] mcqd-1.0.p0 >> [mcqd-1.0.p0] ==================================================== >> [mcqd-1.0.p0] Setting up build directory for mcqd-1.0.p0 >> [mcqd-1.0.p0] Finished extraction >> [mcqd-1.0.p0] No patch files found in ../patches >> [mcqd-1.0.p0] **************************************************** >> [mcqd-1.0.p0] Host system: >> [mcqd-1.0.p0] Linux musclotte 4.17.6-200.fc28.x86_64 #1 SMP Wed Jul 11 >> 20:29:01 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux >> [mcqd-1.0.p0] **************************************************** >> [mcqd-1.0.p0] C compiler: gcc >> [mcqd-1.0.p0] C compiler version: >> [mcqd-1.0.p0] Using built-in specs. >> [mcqd-1.0.p0] COLLECT_GCC=/usr/bin/gcc >> [mcqd-1.0.p0] >> COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper >> [mcqd-1.0.p0] OFFLOAD_TARGET_NAMES=nvptx-none >> [mcqd-1.0.p0] OFFLOAD_TARGET_DEFAULT=1 >> [mcqd-1.0.p0] Target: x86_64-redhat-linux >> [mcqd-1.0.p0] Configured with: ../configure --enable-bootstrap >> --enable-languages=c,c++,fortran,objc,obj-c++,ada,go,lto --prefix=/usr >> --mandir=/usr/share/man --infodir=/usr/share/info >> --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared >> --enable-threads=posix --enable-checking=release --enable-multilib >> --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions >> --enable-gnu-unique-object --enable-linker-build-id >> --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin >> --enable-initfini-array --with-isl --enable-libmpx >> --enable-offload-targets=nvptx-none --without-cuda-driver >> --enable-gnu-indirect-function --enable-cet --with-tune=generic >> --with-arch_32=i686 --build=x86_64-redhat-linux >> [mcqd-1.0.p0] Thread model: posix >> [mcqd-1.0.p0] gcc version 8.1.1 20180712 (Red Hat 8.1.1-5) (GCC) >> [mcqd-1.0.p0] **************************************************** >> [mcqd-1.0.p0] Warning: No files to uninstall for 'mcqd' >> [mcqd-1.0.p0] Uninstalling existing 'mcqd' >> [mcqd-1.0.p0] Removing stamp file >> '/home/dcoudert/sage/local/var/lib/sage/installed/mcqd-1.0' >> [mcqd-1.0.p0] /usr/bin/ld: mcqd.o: relocation R_X86_64_32 against `.rodata' >> can not be used when making a shared object; recompile with -fPIC >> [mcqd-1.0.p0] /usr/bin/ld: final link failed: Nonrepresentable section on >> output >> [mcqd-1.0.p0] collect2: error: ld returned 1 exit status >> [mcqd-1.0.p0] >> ********************************************************************************************************************************************************************** >> [mcqd-1.0.p0] Error: source file/directory libmcqd.so does not exist >> [mcqd-1.0.p0] >> ********************************************************************************************************************************************************************** >> [mcqd-1.0.p0] >> [mcqd-1.0.p0] real 0m1.196s >> [mcqd-1.0.p0] user 0m0.919s >> [mcqd-1.0.p0] sys 0m0.119s >> [mcqd-1.0.p0] >> ************************************************************************ >> [mcqd-1.0.p0] Error installing package mcqd-1.0.p0 >> [mcqd-1.0.p0] >> ************************************************************************ >> [mcqd-1.0.p0] Please email sage-devel >> (http://groups.google.com/group/sage-devel) >> [mcqd-1.0.p0] explaining the problem and including the log file >> [mcqd-1.0.p0] /home/dcoudert/sage/logs/pkgs/mcqd-1.0.p0.log >> [mcqd-1.0.p0] Describe your computer, operating system, etc. >> [mcqd-1.0.p0] If you want to try to fix the problem yourself, *don't* just >> cd to >> [mcqd-1.0.p0] /home/dcoudert/sage/local/var/tmp/sage/build/mcqd-1.0.p0 and >> type 'make' or whatever is appropriate. >> [mcqd-1.0.p0] Instead, the following commands setup all environment variables >> [mcqd-1.0.p0] correctly and load a subshell for you to debug the error: >> [mcqd-1.0.p0] (cd >> '/home/dcoudert/sage/local/var/tmp/sage/build/mcqd-1.0.p0' && >> '/home/dcoudert/sage/sage' --sh) >> [mcqd-1.0.p0] When you are done debugging, you can type "exit" to leave the >> subshell. >> [mcqd-1.0.p0] >> ************************************************************************ >> make[3]: *** [Makefile:2202: >> /home/dcoudert/sage/local/var/lib/sage/installed/mcqd-1.0.p0] Error 1 >> make[3]: Leaving directory '/home/dcoudert/sage/build/make' >> make[2]: *** [Makefile:1877: all-build] Error 2 >> make[2]: Leaving directory '/home/dcoudert/sage/build/make' >> >> real 120m30.079s >> user 96m9.752s >> sys 8m51.791s >> *************************************************************** >> Error building Sage. >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make all-build'): >> >> * package: mcqd-1.0.p0 >> last build time: Feb 14 10:59 >> log file: /home/dcoudert/sage/logs/pkgs/mcqd-1.0.p0.log >> build directory: /home/dcoudert/sage/local/var/tmp/sage/build/mcqd-1.0.p0 >> >> It is safe to delete any log files and build directories, but they >> contain information that is helpful for debugging build problems. >> WARNING: If you now run 'make' again, the build directory of the >> same version of the package will, by default, be deleted. Set the >> environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> >> make[1]: *** [Makefile:33: all-build] Error 1 >> make[1]: Leaving directory '/home/dcoudert/sage' >> make: *** [Makefile:16: build] Error 2 >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> Le 14 févr. 2020 à 00:07, Volker Braun <[email protected]> a écrit : >> >> As always, you can get the latest beta version from the "develop" git >> branch. Alternatively, the self-contained source tarball is at >> http://www.sagemath.org/download-latest.html >> >> >> 6dbca5f8f9 (tag: 9.1.beta4, trac/develop) Updated SageMath version to >> 9.1.beta4 >> 158b93057a Trac #29168: less unused imports and better .lgtm config file >> e510d03069 Trac #29166: refresh the file Iwahori-Hecke >> 7e7d7ec56f Trac #29145: Indeterminacy locus and image of morphisms of schemes >> 9119443092 Trac #29123: little doc cleanup of "prime_range" >> 3322731dd4 Trac #29110: Make `dim` and alias for `dimension` in >> combinatorial polyhedron >> 0b88387957 Trac #29074: Better error message for polar of non-full >> dimensional polyhedra >> ead6f554da Trac #28788: MR38: Fix documentation of spkg-configure.m4 and >> make output more verbose >> 5aac4d5055 Trac #28243: Accelerate `is_cactus()` >> 0324ad84af Trac #29173: fix factorization of multivariate Laurent polynomials >> c1a90dee4c Trac #29163: repair the phc interface >> 886980a802 Trac #29155: Full-dimensional face of Polyhedron should have >> equations >> 3f9375ca99 Trac #29148: Add DESTDIR and Cygwin support for mcqd >> 74c913427f Trac #29144: remove deprecated stuff from tickets 22*** >> 938564c6a4 Trac #29138: cleanup and some fixes for Free Zinbiel algebras >> 128c030f69 Trac #29135: extend the STL representation to unions and >> transforms >> e8fccdff04 Trac #29134: node_number_at_depth broken for binary trees >> 6344f4f6de Trac #29125: `is_inscribed` depends on order of vertices >> 3e754d7157 Trac #29115: Fix deprecation warnings with scipy 1.4 >> 8b9e6bbe8a Trac #29112: Implement incidence matrix for combinatorial >> polyhedron >> 61967966ff Trac #29109: update NTL to the latest version (11.4.3) >> af348cfc28 Trac #29103: get rid of part of itervalues >> 554fa02a4c Trac #29083: first parameter of a normal method must be self >> 67a399edf1 Trac #29081: allow proper detection of gf2x 1.3 >> d5fdda348a Trac #29080: Degenerate Metric Submanifold: New features >> 3c75a3a245 Trac #29062: build/pkgs/python3/spkg-install: Install >> valgrind-python.supp in $SAGE_LOCAL, not in $SAGE_SRC >> 55b2e87f09 Trac #29034: let the example of set with grading (NN) know that >> it is infinite >> 0ff6921902 Trac #28880: Prepare setting up polyhedron from both Vrep and >> Hrep for different backends >> 84403fb80d Trac #28867: 1 imagemagick failing doctest in misc/latex.py >> 1143c8abd3 Trac #28862: Localization of integral domains >> 52644d49e9 Trac #28724: Polyhedron._acted_upon_ should handle left >> multiplication by matrices, linear transformations >> 8870d6bb19 Trac #25049: Add DESTDIR support for r, and other cleanup >> ed7bc14f75 Trac #21811: libecl does not install with libffi 3.3 (e.g. on >> OpenSuSE gcc5-7, Debian 11, etc) >> f4f06c6c47 Trac #29121: One-line fix for blocker ".pc files generated in >> src/ are not cleaned by `make misc-clean` / `make distclean` >> 84e623c1b2 Trac #29120: Two-line fix for "./configure is too sensitive to >> stray files/subdirectories" >> 1d465c7e3c (tag: 9.1.beta3) Updated SageMath version to 9.1.beta3 >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-release" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/db2393b2-294d-4a28-8e49-9e574a815abe%40googlegroups.com. >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-release" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to [email protected]. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/FD07A497-2F71-42CB-B330-D040F17CF4C5%40gmail.com. > > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to [email protected]. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/CAAWYfq2xfjwtbpa1MP%3DL1hgd%3D18GVixKCd%2BiA6WTzEdMqKhwOw%40mail.gmail.com. -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to [email protected]. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/0BA93A2A-C460-42C6-939D-458D4CBC5EDB%40gmail.com.
