On Thu, Jun 18, 2020 at 3:45 AM 'Justin C. Walker' via sage-release
<[email protected]> wrote:
>
>
>
> > On Jun 17, 2020, at 13:22 , Dima Pasechnik <[email protected]> wrote:
> >
> > On Wed, Jun 17, 2020 at 6:38 PM kcrisman <[email protected]> wrote:
> >>
> >>
> >>
> >>
> >>>
> >>> mkdir ../../../../library/tools/libs
> >>>
> >>> installing 'sysdata.rda'
> >>>
> >>> dyld: Library not loaded:
> >>> /Users/.../sage/local/lib/libopenblas_haswellp-r0.3.6.dylib
> >>>
> >>> Referenced from: /Users/.../sage/local/lib/R/lib/libR.dylib
> >>
> >>
> >> For reference, doing
> >>
> >> $ rm -rf local/lib/R/
> >>
> >> ended up solving the problem. But that seems like a bug - shouldn't the
> >> previous R install properly be deleted, in our current paradigm of first
> >> uninstalling (if I understand it correctly)?
> >
> > yes, it appears to be a bug (macOS-specific?). Probably the list of
> > files installed by R spkg is incomplete, and so what's in the list is
> > removed, but
> > this one is not.
> > You can see the file list in local/var/lib/sage/installed/
> > and check whether libR.dylib
> > is there.
>
> Not sure this is related to the above problem, but I checked the results of
> the builds in each of my macOS systems (10.13, 10.14, 10.15), and there are
> no “libR.*” files in either SAGE_ROOT/local/var/lib/sage/installed or
> SAGE_ROOT/local/lib.
>
> Is one of the Mac package gizmos (macports/homebrew/etc) involved?
Sage is able to use R package of homebrew, yes. If this happens on a
system then obviously there will be no data on R installed by Sage.
(look at config.log to see what is used)
Otherwise it's a bug.
On Linux I see
$ grep libR local/var/lib/sage/installed/r-3.6.2.p0
"lib/R/lib/libR.so",
"lib/pkgconfig/libR.pc",
Do you actually get local/var/lib/sage/installed/r-3.6.2.p0 on macOS
if R is istalled by Sage?
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