I now upgraded to Ubuntu 20.04.1 LTS (which may explains why I am reporting errors below I was not reporting before).
Moreover, my config.log confirms that I am using python3.8 from my system: ... ## -------------------------------------------------------- ## ## Checking whether SageMath should install SPKG python3... ## ## -------------------------------------------------------- ## configure:29385: checking whether any of sqlite libpng bzip2 xz libffi is installed as or will be installed as SPKG configure:29394: result: no configure:29404: checking for python3 >= 3.6, < 3.9 with modules sqlite3, ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core configure:29410: result: configure:29425: checking ... whether /usr/bin/python3.8 is good configure:29618: result: yes configure:29620: checking for python3 >= 3.6, < 3.9 with modules sqlite3, ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core configure:29679: result: /usr/bin/python3.8 configure:29694: will use system package and not install SPKG python3 ... Testing few optional and external packages, I get: Using --optional=4ti2,ccache,cryptominisat,dot2tex,e_antic,external,fricas,glucose,latte_int,libnauty,lidia,lrslib,memlimit,normaliz,notedown,openssl,pandoc_attributes,pycosat,pynormaliz,rst2ipynb,sage,sage_numerical_backends_coin ---------------------------------------------------------------------- sage -t --long --random-seed=0 src/doc/en/constructions/interface_issues.rst # 1 doctest failed sage -t --long --random-seed=0 src/doc/en/constructions/linear_algebra.rst # 1 doctest failed sage -t --long --random-seed=0 src/doc/en/developer/coding_in_other.rst # 1 doctest failed sage -t --long --random-seed=0 src/sage/combinat/designs/incidence_structures.py # 1 doctest failed sage -t --long --random-seed=0 src/sage/databases/oeis.py # 1 doctest failed sage -t --long --random-seed=0 src/sage/graphs/generic_graph.py # 2 doctests failed sage -t --long --random-seed=0 src/sage/graphs/graph.py # 3 doctests failed sage -t --long --random-seed=0 src/sage/interfaces/octave.py # 3 doctests failed sage -t --long --random-seed=0 src/sage/symbolic/integration/external.py # 1 doctest failed sage -t --long --random-seed=0 src/sage/symbolic/integration/integral.py # 1 doctest failed Doctests interrupted: 2236/4204 files tested ---------------------------------------------------------------------- External software detected for doctesting: graphviz,internet,octave For some reason that I ignore, the doctests were interrupted while I was in a webconf on the same machine. I will rerun the tests and post the result later. Doctests failures are copied below. sage -t --long --random-seed=0 src/doc/en/constructions/linear_algebra.rst ********************************************************************** File "src/doc/en/constructions/linear_algebra.rst", line 454, in doc.en.constructions.linear_algebra Failed example: octave.solve_linear_system(A,b) # optional - octave Exception raised: Traceback (most recent call last): File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/doctest/forker.py", line 720, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/doctest/forker.py", line 1145, in compile_and_execute exec(compiled, globs) File "<doctest doc.en.constructions.linear_algebra[4]>", line 1, in <module> octave.solve_linear_system(A,b) # optional - octave File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/interfaces/octave.py", line 519, in solve_linear_system return eval(sol) File "<string>", line 1 [-0.333333, 0.666667, 0, ^ SyntaxError: unexpected EOF while parsing ********************************************************************** 1 item had failures: 1 of 115 in doc.en.constructions.linear_algebra 0 tests not run because we ran out of time [93 tests, 1 failure, 3.17 s] sage -t --long --random-seed=0 src/doc/en/constructions/interface_issues.rst ********************************************************************** File "src/doc/en/constructions/interface_issues.rst", line 432, in doc.en.constructions.interface_issues Failed example: octave("atanh(1.1)") ## optional - octave Expected: (1.52226,-1.5708) Got: (1.52226,1.5708) ********************************************************************** 1 item had failures: 1 of 22 in doc.en.constructions.interface_issues 0 tests not run because we ran out of time [17 tests, 1 failure, 2.68 s] sage -t --long --random-seed=0 src/sage/interfaces/octave.py ********************************************************************** File "src/sage/interfaces/octave.py", line 159, in sage.interfaces.octave.Octave Failed example: octave.eval("a = [ 1, 1, 2; 3, 5, 8; 13, 21, 33 ]") # optional - octave Expected: 'a =\n\n 1 1 2\n 3 5 8\n 13 21 33\n\n' Got: 'a =\n\n 1 1 2\n 3 5 8\n 13 21 33\n' ********************************************************************** File "src/sage/interfaces/octave.py", line 161, in sage.interfaces.octave.Octave Failed example: octave.eval("b = [ 1; 3; 13]") # optional - octave Expected: 'b =\n\n 1\n 3\n 13\n\n' Got: 'b =\n\n 1\n 3\n 13\n' ********************************************************************** File "src/sage/interfaces/octave.py", line 496, in sage.interfaces.octave.Octave.solve_linear_system Failed example: octave.solve_linear_system(A,b) # optional - octave (and output is slightly random in low order bits) Exception raised: Traceback (most recent call last): File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/doctest/forker.py", line 720, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/doctest/forker.py", line 1145, in compile_and_execute exec(compiled, globs) File "<doctest sage.interfaces.octave.Octave.solve_linear_system[4]>", line 1, in <module> octave.solve_linear_system(A,b) # optional - octave (and output is slightly random in low order bits) File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/interfaces/octave.py", line 519, in solve_linear_system return eval(sol) File "<string>", line 1 [-0.333333, 0.666667, 0, ^ SyntaxError: unexpected EOF while parsing ********************************************************************** 2 items had failures: 2 of 8 in sage.interfaces.octave.Octave 1 of 6 in sage.interfaces.octave.Octave.solve_linear_system 3 not tested tests not run 0 tests not run because we ran out of time [132 tests, 3 failures, 2.38 s] sage -t --long --random-seed=0 src/sage/graphs/graph.py ********************************************************************** File "src/sage/graphs/graph.py", line 4507, in sage.graphs.graph.Graph.has_homomorphism_to Failed example: g.has_homomorphism_to(graphs.CycleGraph(4)) is not False Expected: False Got: True ********************************************************************** File "src/sage/graphs/graph.py", line 4902, in sage.graphs.graph.Graph.minor Failed example: L = g.minor(graphs.CompleteGraph(3)) Expected: Traceback (most recent call last): ... ValueError: This graph has no minor isomorphic to H ! Got: <BLANKLINE> ********************************************************************** File "src/sage/graphs/graph.py", line 6112, in sage.graphs.graph.Graph.topological_minor Failed example: g.topological_minor(graphs.CycleGraph(3)) Expected: False Got: Subgraph of (Subgraph of (RandomGNP(15,0.300000000000000))): Graph on 0 vertices ********************************************************************** 3 items had failures: 1 of 10 in sage.graphs.graph.Graph.has_homomorphism_to 1 of 14 in sage.graphs.graph.Graph.minor 1 of 7 in sage.graphs.graph.Graph.topological_minor 2 mcqd tests not run 2 not tested tests not run 13 python_igraph tests not run 0 tests not run because we ran out of time [1238 tests, 3 failures, 33.45 s] sage -t --long --random-seed=0 src/sage/combinat/designs/incidence_structures.py ********************************************************************** File "src/sage/combinat/designs/incidence_structures.py", line 2027, in sage.combinat.designs.incidence_structures.IncidenceStructure.coloring Failed example: len(designs.steiner_triple_system(7).coloring()) Expected: 3 Got: 2 ********************************************************************** 1 item had failures: 1 of 6 in sage.combinat.designs.incidence_structures.IncidenceStructure.coloring 8 gap_packages tests not run 3 not tested tests not run 0 tests not run because we ran out of time [337 tests, 1 failure, 1.59 s] sage -t --long --random-seed=0 src/doc/en/developer/coding_in_other.rst ********************************************************************** File "src/doc/en/developer/coding_in_other.rst", line 728, in doc.en.developer.coding_in_other.solve_linear_system Failed example: octave.solve_linear_system(A,b) # optional - octave Exception raised: Traceback (most recent call last): File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/doctest/forker.py", line 720, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/doctest/forker.py", line 1145, in compile_and_execute exec(compiled, globs) File "<doctest doc.en.developer.coding_in_other.solve_linear_system[4]>", line 1, in <module> octave.solve_linear_system(A,b) # optional - octave File "/home/slabbe/GitBox/sage/local/lib/python3.8/site-packages/sage/interfaces/octave.py", line 519, in solve_linear_system return eval(sol) File "<string>", line 1 [-0.333333, 0.666667, 0, ^ SyntaxError: unexpected EOF while parsing ********************************************************************** 1 item had failures: 1 of 6 in doc.en.developer.coding_in_other.solve_linear_system 0 tests not run because we ran out of time [41 tests, 1 failure, 0.84 s] sage -t --long --random-seed=0 src/sage/symbolic/integration/external.py ********************************************************************** File "src/sage/symbolic/integration/external.py", line 260, in sage.symbolic.integration.external.parse_moutput_from_json Failed example: sorted(L) # optional internet Expected: [u'-Cos[x]', u'{{x == Pi C[1], Element[C[1], Integers]}}'] Got: ['-Cos[x]', '{{x == 0}}', '{{x == Pi C[1], Element[C[1], Integers]}}'] ********************************************************************** 1 item had failures: 1 of 10 in sage.symbolic.integration.external.parse_moutput_from_json 0 tests not run because we ran out of time [48 tests, 1 failure, 29.29 s] sage -t --long --random-seed=0 src/sage/graphs/generic_graph.py ********************************************************************** File "src/sage/graphs/generic_graph.py", line 8909, in sage.graphs.generic_graph.GenericGraph.nowhere_zero_flow Failed example: h = g.nowhere_zero_flow(k=3) Expected: Traceback (most recent call last): ... EmptySetError: the problem has no feasible solution Got: <BLANKLINE> ********************************************************************** File "src/sage/graphs/generic_graph.py", line 9530, in sage.graphs.generic_graph.GenericGraph.disjoint_routed_paths Failed example: p1,p2 = g.disjoint_routed_paths([((0, 0), (4, 4)), ((0, 4), (4, 0))]) Expected: Traceback (most recent call last): ... EmptySetError: the disjoint routed paths do not exist Got: <BLANKLINE> ********************************************************************** 2 items had failures: 1 of 5 in sage.graphs.generic_graph.GenericGraph.disjoint_routed_paths 1 of 29 in sage.graphs.generic_graph.GenericGraph.nowhere_zero_flow 17 bliss tests not run 6 not tested tests not run 39 python_igraph tests not run 0 tests not run because we ran out of time [3519 tests, 2 failures, 54.81 s] sage -t --long --random-seed=0 src/sage/symbolic/integration/integral.py ********************************************************************** File "src/sage/symbolic/integration/integral.py", line 72, in sage.symbolic.integration.integral.IndefiniteIntegral.__init__ Failed example: (f*f).integrate(x, algorithm="mathematica_free") # optional -- internet Expected: -b*log(e^(-(a - x)/b) + 1) + x + b/(e^(-(a - x)/b) + 1) Got: -b*log(e^(a/b) + e^(x/b)) + x + b/(e^(-(a - x)/b) + 1) ********************************************************************** 1 item had failures: 1 of 12 in sage.symbolic.integration.integral.IndefiniteIntegral.__init__ 3 tests not run due to known bugs 2 maple tests not run 3 mathematica tests not run 0 tests not run because we ran out of time [216 tests, 1 failure, 34.98 s] sage -t --long --random-seed=0 src/sage/databases/oeis.py ********************************************************************** File "src/sage/databases/oeis.py", line 527, in sage.databases.oeis.OEIS.find_by_subsequence Failed example: oeis.find_by_subsequence([2, 3, 5, 8, 13, 21, 34, 55, 89, 144, 233, 377]) # optional -- internet Expected: 0: A000045: Fibonacci numbers: F(n) = F(n-1) + F(n-2) with F(0) = 0 and F(1) = 1. 1: A212804: Expansion of (1-x)/(1-x-x^2). 2: A177194: Fibonacci numbers whose decimal expansion does not contain any digit 0. Got: 0: A000045: Fibonacci numbers: F(n) = F(n-1) + F(n-2) with F(0) = 0 and F(1) = 1. 1: A212804: Expansion of (1 - x)/(1 - x - x^2). 2: A177194: Fibonacci numbers whose decimal expansion does not contain any digit 0. ********************************************************************** 1 item had failures: 1 of 3 in sage.databases.oeis.OEIS.find_by_subsequence 5 webbrowser tests not run 0 tests not run because we ran out of time [287 tests, 1 failure, 37.14 s] -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/cefe19ce-e22b-47e6-8cb5-717cb087e795n%40googlegroups.com.